Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4341808   twinkle homolog protein, chloroplastic/mitochondrial 
 osa-r.5   4341808   twinkle homolog protein, chloroplastic/mitochondrial 
 osa-m.8   4341808   twinkle homolog protein, chloroplastic/mitochondrial 
 ath-u.4   AT1G30680   toprim domain-containing protein 
 gma-u.4   100804637   twinkle homolog protein, chloroplastic/mitochondrial 
 gma-u.4   100779625   twinkle homolog protein, chloroplastic/mitochondrial 
 sly-u.4   101264268   twinkle homolog protein, chloroplastic/mitochondrial 
 ppo-u.4   7480391   twinkle homolog protein, chloroplastic/mitochondrial 
 mtr-u.4   25486321   twinkle homolog protein, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 4341808 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3440   Homologous recombination  2 54 2.24
 osa450   Selenocompound metabolism  1 19 -
 osa3008   Ribosome biogenesis in eukaryotes  2 90 -
 osa230   Purine metabolism  1 91 -
 osa270   Cysteine and methionine metabolism  1 122 -

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osa:LOC4341808 (twinkle homolog protein, chloroplastic/mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4341808
osa-r.5
for
4341808
osa-m.8
for
4341808
ath-u.4
for
AT1G30680
gma-u.4
for
100804637
gma-u.4
for
100779625
sly-u.4
for
101264268
ppo-u.4
for
7480391
mtr-u.4
for
25486321
1 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 9.9 7.6
 12.2
 7.9
 3.9
 4.1
 9.2
 4.0
 1.7
2 LOC4337150 DNA polymerase I A, chloroplastic-like 4337150 Os04g0637400 6.9 6.5
 7.3
 3.7
3.7
 2.7
2.2
 4.2
3.8
 5.5
 4.4
2.6
 2.5
2.2
3 LOC9269607 uncharacterized LOC9269607 9269607 Os02g0266500 6.7 7.3
 6.1
 1.2
 2.5
 4.2
 1.5
 2.6
 1.0
4 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 6.7 6.9
 6.5
 7.8
 4.1
 4.5
 3.1
 5.6
 4.0
5 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 6.6 7.0
 6.2
 2.2
2.1
 0.9
0.6
 1.1
1.1
 3.8
1.0
 2.3
0.9
 2.4
6 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 6.5 6.9
 6.2
 2.2
 1.4
1.0
 3.8
2.7
 2.9
 3.6
 2.4
7 LOC4351600 nucleolar protein 6 4351600 Os12g0166500 6.3 5.5
 7.2
 3.8
 4.3
3.2
 3.3
2.5
 5.3
 2.6
 4.1
8 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 6.3 4.9
 7.7
 3.1
 2.0
1.4
 4.4
2.7
 1.5
 1.2
 3.6
9 LOC4342673 rRNA biogenesis protein RRP5 4342673 Os07g0203300 6.2 5.6
 6.8
 3.0
 3.6
3.5
 3.3
2.1
 10.2
 3.8
 3.5
10 LOC9269203 tRNase Z TRZ2, chloroplastic 9269203 Os09g0482680 6.2 5.2
 7.2
 8.8
0.8
 2.1
2.0
 3.2
1.4
 1.9
1.4
 6.1
2.1
 2.7
0.0
11 LOC9271035 DNA topoisomerase 1 9271035 Os06g0281400 6.0 6.2
 5.7
 6.4
 3.7
2.9
 5.0
4.2
 5.8
 5.2
 5.6
12 LOC4326261 DNA gyrase subunit B, chloroplastic/mitochondrial-like 4326261 OSNPB_010268300 6.0 6.8
 5.1
 10.2
4.1
 3.5
2.8
 3.9
2.8
 7.5
 2.2
 2.4
13 LOC4351665 dynamin-like protein ARC5 4351665 5.8 6.4
 5.2
 0.3
 0.4
 0.8
 2.5
 2.7
 1.0
14 LOC4332899 uncharacterized LOC4332899 4332899 Os03g0363400 5.8 5.6
 6.0
 2.0
 1.3
 3.7
 0.7
 1.8
 1.0
0.3
15 LOC4348255 uncharacterized LOC4348255 4348255 Os10g0198600 5.7 7.0
 4.5
 0.8
 1.0
0.2
 2.8
1.9
 0.6
 2.4
0.8
 0.7
16 LOC4336345 DNA mismatch repair protein MSH1, mitochondrial 4336345 Os04g0507016 5.7 4.9
 6.5
 3.1
 3.1
1.7
 3.9
2.2
 1.4
 2.4
 2.6
17 LOC4325041 DNA repair protein recA homolog 3, mitochondrial 4325041 Os01g0901200 5.6 5.0
 6.2
 2.1
 1.8
1.7
 1.2
0.9
 4.4
 3.6
0.8
 1.2
0.5
18 LOC4327479 cysteine synthase-like 4327479 Os01g0814800 5.5 4.5
 6.5
 8.4


2.2
 1.6
19 LOC4341695 DNA-directed RNA polymerase 3B, chloroplastic 4341695 Os06g0652000 5.5 5.8
 5.1
 5.7
3.5
 3.8
3.7
 4.8
2.5
 6.2
5.7
 3.8
3.7
 4.9
4.3
20 LOC4327311 uncharacterized RNA methyltransferase BH0687 4327311 Os01g0193600 5.4 5.8
 5.1
 6.3
 4.7
 4.4
 4.0
 2.6
 2.1
21 LOC4349098 uncharacterized LOC4349098 4349098 Os10g0512500 5.4 6.7
 4.0
 2.6
 1.2
 0.9
 1.1
 2.7
 0.2
22 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 5.3 4.9
 5.7
 8.1
 2.0
 5.2
 3.3
 4.8
 3.1
23 LOC4339686 pentatricopeptide repeat-containing protein At1g15510, chloroplastic 4339686 Os05g0574800 5.3 7.6
6.2
 1.8
 2.4
 4.7
 4.0
 1.8
24 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 5.3 5.6
 4.9
 9.0
2.6
 3.9
3.8
 3.9
3.1
 6.7
 3.5
3.2
 3.1
2.8
25 LOC4329061 uncharacterized protein At4g37920 4329061 Os02g0291500 5.2 5.7
 4.8
 5.3
 2.5
 4.3
 3.3
 5.3
2.8
 1.1
26 LOC4329995 polyribonucleotide nucleotidyltransferase 2, mitochondrial-like 4329995 OSNPB_020617700 5.2 4.8
 5.7
 4.5
 3.4
 1.5
 7.1
 3.2
 2.7
27 LOC4331982 uncharacterized LOC4331982 4331982 Os03g0203100 5.2 4.3
 6.0
 4.4
 2.9
2.9
 2.8
2.2
 5.7
 4.1
 3.4
28 LOC4334623 pentatricopeptide repeat-containing protein At1g74850, chloroplastic 4334623 Os03g0824100 5.2 6.3
 4.1
 2.6
 1.3
1.2
 2.4
1.9
 3.0
 2.2
 1.3
29 LOC4332018 methionine--tRNA ligase, chloroplastic/mitochondrial 4332018 Os03g0209600 5.1 5.7
 4.5
 4.8
 3.0
2.9
 4.7
2.7
 1.8
 1.0
 1.8
30 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 5.0 5.3
 4.7
 4.2
 1.7
1.6
 2.6
2.4
 3.0
 3.4
 1.8
31 LOC4327529 thioredoxin-like fold domain-containing protein MRL7 homolog, chloroplastic 4327529 Os01g0829000 5.0 4.7
 5.4
 6.4
 4.2
2.9
 2.6
2.0
 3.2
 1.5
 1.9
32 LOC4338325 proline-, glutamic acid- and leucine-rich protein 1 4338325 Os05g0295900 5.0 3.7
 6.3
 1.4
 3.7
2.4
 4.0
2.8
 4.0
 2.6
 3.2
2.4
33 LOC4330083 DEAD-box ATP-dependent RNA helicase 47A-like 4330083 OSNPB_020636300 5.0 5.2
 4.7
 5.1
 0.7
0.6
 1.0
1.0
 3.4
 0.5
 2.1
34 LOC4336577 uncharacterized protein At3g06530 4336577 Os04g0548300 4.9 4.0
 5.9
 3.5
 3.8
2.9
 3.3
2.9
 6.9
 2.6
 4.0
35 LOC4333402 fructokinase-like 2, chloroplastic 4333402 Os03g0602600 4.9 6.0
 3.8
 9.8
 3.5
3.3
 3.7
3.2
 5.6
 5.8
 3.8
36 LOC9268167 ruBisCO large subunit-binding protein subunit alpha 9268167 Os09g0563300 4.9 5.5
 4.3
 8.4
4.7
 2.1
1.9
 3.4
2.7
 6.3
2.8
 2.8
2.7
 4.1
2.1
37 wsl8 white stripe leaf8 4338875 Os05g0430200 4.8 4.3
 5.4
 6.7
 6.5
5.3
 5.1
4.6
 5.0
 4.3
4.0
 3.3
38 LOC4340102 translation factor GUF1 homolog, mitochondrial-like 4340102 OSNPB_060144800 4.8 4.6
 5.1
 -0.8
 -0.3
 0.9
 5.0
 3.8
 1.7
39 LOC4327755 uncharacterized protein At4g37920 4327755 Os01g0306800 4.8 6.8
 2.8
 4.1
 1.0
0.4
 2.3
2.2
 6.8
 1.8
 2.0
40 LOC4342999 transcription termination factor MTEF18, mitochondrial 4342999 Os07g0409400 4.8 3.1
 6.5
 -0.1
 2.2
-0.2
 0.9
0.6
 1.2
 3.5
 0.5
0.5
41 wsl3 white stripe leaf3 4348823 Os10g0462800 4.8 5.0
 4.6
 4.4
 4.3
2.1
 4.0
3.3
 4.8
 5.4
 2.1
42 LOC4339536 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4339536 Os05g0551900 4.8 6.4
3.5
 1.4
1.0
 3.1
2.6
 2.3
 3.5
 2.7
1.1
43 LOC4333869 zinc finger protein VAR3, chloroplastic 4333869 Os03g0708900 4.7 3.6
 5.9
 6.3
 5.1
2.9
 4.4
3.7
 7.1
 4.5
 3.1
44 LOC4338320 U3 small nucleolar RNA-associated protein 25 4338320 Os05g0295100 4.7 4.1
 5.4
 1.8
 1.3
1.2
 3.1
0.7
 5.3
 2.0
 5.2
1.8
45 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 4.7 5.3
 4.2
 3.9
 3.0
2.1
 4.7
3.7
 1.9
 2.0
 2.3
46 LOC4327345 phosphoribosylaminoimidazole carboxylase, chloroplastic 4327345 Os01g0199900 4.6 4.6
 4.6
 7.0
 2.4
1.9
 1.5
0.9
 4.0
 2.8
1.5
 3.7
47 LOC4336254 DNA-directed RNA polymerase III subunit 1 4336254 Os04g0492300 4.6 3.8
 5.4
 6.0
 2.6
 3.0
 6.2
 2.5
 4.3
3.3
48 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 4.6 3.5
 5.6
0.6
 1.5
 0.1
 2.3
49 LOC4331214 DEAD-box ATP-dependent RNA helicase 48-like 4331214 OSNPB_020826100 4.6 3.9
 5.2
 2.3
 5.0
0.1
 4.3
0.7
 6.5
 4.3
3.6
 3.3
50 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 4.5 4.6
 4.5
 3.3
 1.6
1.2
 3.2
2.2
 2.3
 2.0
1.1
 0.8
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