Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4341929   pentatricopeptide repeat-containing protein At3g61360 
 osa-r.5   4341929   pentatricopeptide repeat-containing protein At3g61360 
 ath-u.4   AT3G61360   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100778650   pentatricopeptide repeat-containing protein At3g61360 
 sly-u.4   101264923   pentatricopeptide repeat-containing protein At3g61360 
 ppo-u.4   18094061   pentatricopeptide repeat-containing protein At3g61360 
 mtr-u.4   112416267   pentatricopeptide repeat-containing protein At3g61360 

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Top 50 coexpressed genes to 4341929 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa250   Alanine, aspartate and glutamate metabolism  1 53 -
 osa53   Ascorbate and aldarate metabolism  1 64 -
 osa562   Inositol phosphate metabolism  1 64 -
 osa230   Purine metabolism  2 91 -
 osa480   Glutathione metabolism  1 114 -

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osa:LOC4341929 (pentatricopeptide repeat-containing protein At3g61360) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4341929
osa-r.5
for
4341929
ath-u.4
for
AT3G61360
gma-u.4
for
100778650
sly-u.4
for
101264923
ppo-u.4
for
18094061
mtr-u.4
for
112416267
1 LOC4330592 protein TIC 20-v, chloroplastic 4330592 Os02g0726600 3.1 3.6
 1.1
 3.5
2.0
 0.5
 -0.4
 1.4
2 LOC4347017 pentatricopeptide repeat-containing protein At4g02750 4347017 Os09g0407800 2.9 4.0
1.0
 1.0
4.6
3 LOC4346468 protein CLMP1 4346468 Os09g0135400 2.9 3.4
 1.4
 3.8
3.2
 -0.2
-1.1
 1.4
1.3
 0.7
4 LOC4324854 pentatricopeptide repeat-containing protein At3g46790, chloroplastic 4324854 Os01g0848300 2.8 4.3
 4.6
 2.4
1.4
 0.2
 1.8
 -0.2
5 LOC4337151 uncharacterized LOC4337151 4337151 Os04g0637500 2.8 3.9




6 LOC4337441 K(+) efflux antiporter 2, chloroplastic 4337441 Os04g0682800 2.8 3.6
 0.3
-1.7
 2.2
1.8
 1.4
 1.1
0.9
 0.2
-0.9
7 LOC4332642 adenylosuccinate lyase 4332642 Os03g0313600 2.7 3.3
 3.6
0.5
 2.9
2.6
 1.1
 1.7
 1.3
8 LOC4344347 rhodanese-like/PpiC domain-containing protein 12, chloroplastic 4344347 Os07g0687500 2.7 3.5
 -0.0
 1.5
 -0.8
 0.4
 1.2
9 LOC4338555 pentatricopeptide repeat-containing protein At1g10270 4338555 Os05g0365500 2.7 3.2
 1.9
1.8
 1.7
1.3
 -0.0
 2.2
2.1
 3.4
10 LOC4324899 probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial 4324899 Os01g0888500 2.7 3.4
 0.8
 1.6
1.5
 2.4
 1.8
0.4
 2.0
1.5
11 LOC4330030 pentatricopeptide repeat-containing protein At3g29230 4330030 Os02g0625100 2.6 3.7




12 LOC4328439 phosphatase IMPL1, chloroplastic 4328439 Os02g0169900 2.5 3.4
 -0.3
 1.8
 -0.5
 0.7
0.2
 -0.4
13 LOC4349434 nuclear intron maturase 2, mitochondrial 4349434 Os10g0567500 2.5 3.1
 4.5
 1.2
0.8
 1.1
 2.6
1.7
 3.0
2.2
14 LOC4339341 periodic tryptophan protein 2 4339341 Os05g0519500 2.5 3.4
 -1.1
 1.2
0.7
 1.5
 2.3
1.0
 3.5
15 LOC4333316 membrane metalloprotease ARASP, chloroplastic 4333316 Os03g0579000 2.5 3.2
 1.6
0.8
 1.0
0.2
 -0.7
 0.4
-0.2
 2.2
16 LOC4336084 uncharacterized LOC4336084 4336084 Os04g0464600 2.5 3.2
 2.7
 1.1
0.6
 1.4
 -0.5
 0.5
17 LOC4338452 chaperone protein dnaJ A7A, chloroplastic-like 4338452 OSNPB_050334400 2.5 2.8
 1.2
-0.1
 2.6
2.4
 0.4
 2.7
1.2
 1.8
18 LOC4327045 pentatricopeptide repeat-containing protein At1g55890, mitochondrial 4327045 Os01g0785700 2.4 3.0




19 LOC9269748 pentatricopeptide repeat-containing protein At4g18520, chloroplastic 9269748 Os03g0644200 2.4 3.2
 3.6
 2.8
 2.8
 2.2
 -0.0
20 LOC4342113 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 4342113 OSNPB_060725900 2.4 2.7
 0.1
-0.1
 2.0
1.2
 -0.6
 0.9
0.5
 1.4
21 LOC4336289 uncharacterized LOC4336289 4336289 Os04g0497900 2.3 2.7
 3.2
 3.2
 0.1
 0.7
 2.6
22 LOC4330808 presequence protease 1, chloroplastic/mitochondrial 4330808 Os02g0761400 2.3 3.0
 1.2
0.8
 3.4
 1.1
 0.9
-0.3
 1.6
23 LOC4341063 protein BOLA4, chloroplastic/mitochondrial 4341063 Os06g0484600 2.3 2.6
 0.6
 0.9
 -2.2
 -0.1
 1.4
24 LOC4340581 probable glutathione S-transferase DHAR2, chloroplastic 4340581 Os06g0232600 2.3 2.9
 0.3
 1.5
1.2
 0.3
 0.5
 1.1
25 LOC4349446 eukaryotic translation initiation factor 3 subunit B 4349446 Os10g0569200 2.3 2.8
 0.5
0.2
 1.2
1.2
 -0.3
 0.1
-0.9
 3.7
26 LOC4325865 pentatricopeptide repeat-containing protein At1g69290 4325865 Os01g0788900 2.3 2.7
 4.9
2.2
 4.8
 3.3
 3.0
 3.1
2.0
27 LOC9268419 pentatricopeptide repeat-containing protein At1g52620 9268419 2.3 3.1
 3.0
 0.8
 4.4
 1.7
 1.8
28 LOC107277503 pentatricopeptide repeat-containing protein At5g46100 107277503 Os01g0672166 2.3 3.1
 3.3
 0.5
 1.0
 1.7
 0.3
29 LOC4342049 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like 4342049 Os06g0712900 2.3 2.8
 0.4
 1.3
0.5
 -1.4
-2.5
 -0.1
 1.4
30 LOC4343368 pentatricopeptide repeat-containing protein At1g05670, mitochondrial 4343368 Os07g0513200 2.3 3.1




31 LOC4339430 pentatricopeptide repeat-containing protein At3g49240, mitochondrial 4339430 Os05g0534000 2.3 2.6
2.0
1.6
 -0.3
 1.8
 4.9
2.4
32 LOC4330253 transmembrane protein 208 homolog 4330253 Os02g0666800 2.3 3.2
 2.0
0.3
 0.4
0.2
 -0.7
 0.8
 -0.9
33 LOC4324538 uncharacterized LOC4324538 4324538 Os01g0496900 2.3 3.0
 -0.2
 1.9
1.1
 0.3
 1.0
0.7
 0.5
34 LOC4340893 UPF0061 protein AZOSEA38000 4340893 Os06g0320700 2.2 2.5
 -0.1
 1.3
 1.0
-0.2
 0.5
 0.4
35 LOC4341569 stromal processing peptidase, chloroplastic-like 4341569 Os06g0625400 2.2 2.6
 0.1
 3.1
1.8
 1.3
 1.4
 0.5
36 LOC4338449 chaperone protein dnaJ A7A, chloroplastic-like 4338449 Os05g0333600 2.2 2.9
 1.2
-0.1
 2.6
2.4
 0.4
 2.7
1.2
 1.8
37 LOC4338700 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A 4338700 Os05g0395000 2.2 2.6
 0.5
 0.1
-0.2
 -0.0
-0.8
 1.5
 0.2
38 LOC4330071 ATP-dependent Clp protease proteolytic subunit 4330071 Os02g0634500 2.2 2.3




39 LOC4346410 CBS domain-containing protein CBSX1, chloroplastic 4346410 Os09g0115500 2.2 2.4
 0.3
-0.4
 2.0
1.7
 3.1
0.5
 1.4
0.7
 0.6
-1.4
40 LOC4345375 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 4345375 OSNPB_080360100 2.2 2.7
 0.7
 3.6
 3.9
 1.7
0.8
 -0.2
41 LOC4346388 sodium/proton antiporter 1 4346388 Os09g0109800 2.2 2.6
 0.7
 1.7
 0.8
 -0.3
-0.8
 1.0
42 LOC4330066 pentatricopeptide repeat-containing protein At4g36680, mitochondrial 4330066 Os02g0633200 2.2 2.4
 3.0
2.3
 0.9
-0.1
 2.6
0.3
 2.0
1.8
 3.3
0.4
43 LOC4330260 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 4330260 Os02g0668100 2.2 2.5
 -0.9
 1.4
 -1.2
 -0.1
 1.7
44 LOC4344224 uncharacterized LOC4344224 4344224 Os07g0668200 2.2 2.8
 2.0
1.4
 0.8
0.5
 0.6
 1.5
 2.1
45 LOC4324012 proteinaceous RNase P 2 4324012 Os01g0968000 2.2 2.8
 -0.1
-1.2
 0.8
0.0
 -0.5
 1.3
0.2
 2.0
46 LOC4336989 APO protein 1, chloroplastic 4336989 Os04g0615500 2.2 2.6
 2.0
 3.0
2.3
 2.1
 0.4
 -0.7
47 LOC4347448 protein Iojap, chloroplastic 4347448 Os09g0493600 2.2 2.8
 1.6
 1.3
0.5
 -0.3
 0.4
-0.5
 0.9
48 LOC4347153 uncharacterized LOC4347153 4347153 Os09g0436900 2.1 2.7
 -0.5
 2.0
 0.9
 1.5
 0.2
49 LOC4333513 protein OSB2, chloroplastic 4333513 Os03g0633900 2.1 2.4
 1.4
 2.1
2.0
 1.2
0.3
 1.2
0.7
 2.0
0.8
50 LOC4346359 uncharacterized LOC4346359 4346359 Os08g0566700 2.1 3.0




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