Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4342480   proline--tRNA ligase, chloroplastic/mitochondrial 
 osa-r.5   4342480   proline--tRNA ligase, chloroplastic/mitochondrial 
 osa-m.8   4342480   proline--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.4   OVA6   Class II aaRS and biotin synthetases superfamily protein 
 gma-u.4   100815508   proline--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.4   100788013   proline--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.4   101250341   proline--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.4   18106518   proline--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.4   11420887   proline--tRNA ligase, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 4342480 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  11 69 15.69
 osa3010   Ribosome  7 336 5.20
 osa3060   Protein export  3 49 3.82
 osa300   Lysine biosynthesis  2 13 3.48
 osa450   Selenocompound metabolism  2 16 3.29

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osa:LOC4342480 (proline--tRNA ligase, chloroplastic/mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4342480
osa-r.5
for
4342480
osa-m.8
for
4342480
ath-u.4
for
OVA6
gma-u.4
for
100815508
gma-u.4
for
100788013
sly-u.4
for
101250341
ppo-u.4
for
18106518
mtr-u.4
for
11420887
1 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 7.1 7.7
 6.5
 5.6
 4.6
3.6
 4.5
3.2
 7.9
 3.5
 3.6
2 LOC4332018 methionine--tRNA ligase, chloroplastic/mitochondrial 4332018 Os03g0209600 7.1 4.7
 9.5
 7.3
 4.3
3.4
 5.9
4.6
 5.9
 2.6
 3.7
3 LOC4330025 lysine--tRNA ligase, chloroplastic/mitochondrial 4330025 Os02g0623500 7.0 7.6
 6.4
 10.8
 5.4
 5.9
 6.1
 3.4
 2.7
4 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 6.5 6.2
 6.8
 5.7
 5.6
3.4
 6.3
3.1
 3.9
 2.0
1.3
 5.6
5 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 6.5 6.8
 6.1
 6.5
 4.6
 6.3
 4.8
 6.5
 5.8
6 LOC4337588 uncharacterized protein At5g02240 4337588 Os05g0110300 6.3 6.3
 6.3
 3.6
1.3
 2.9
0.4
 2.0
0.2
 2.9
 0.7
 1.0
0.8
7 LOC4352408 phenylalanine--tRNA ligase, chloroplastic/mitochondrial 4352408 Os12g0533700 6.3 6.3
 6.3
 6.8
 3.6
1.8
 2.6
2.1
 8.2
 1.9
 4.7
8 LOC4343250 asparagine--tRNA ligase, chloroplastic/mitochondrial 4343250 Os07g0485400 6.2 6.9
 5.6
 6.7
 5.3
4.4
 6.8
6.7
 7.7
 2.2
2.2
 5.0
9 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 6.2 6.3
 6.1
 6.8
 4.2
 4.3
 6.8
 2.9
 2.8
10 LOC4334910 uncharacterized LOC4334910 4334910 Os04g0105700 6.0 6.4
 5.7
 3.9
 3.5
 3.7
 4.1
 2.2
 2.5
11 LOC4350378 protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic-like 4350378 Os11g0425300 5.7 5.3
 6.1
 5.1
 2.3
1.6
 4.0
2.7
 5.5
 4.4
 3.4
12 LOC4338780 uncharacterized protein Cbei_0202 4338780 Os05g0411200 5.7 4.9
 6.5
 2.6
 4.3
1.3
 3.3
2.6
 4.1
 1.6
 1.9
13 LOC4332739 ABC transporter I family member 6, chloroplastic 4332739 Os03g0332700 5.7 5.9
 5.4
 5.2
 4.0
2.4
 4.6
2.4
 8.2
 2.8
 4.7
14 LOC4330767 histidine--tRNA ligase, chloroplastic/mitochondrial 4330767 Os02g0754700 5.6 5.2
 6.1
 5.7
-0.3
 4.8
 4.9
 5.6
 2.2
 2.9
15 LOC107275646 NLR family CARD domain-containing protein 3 107275646 Os06g0237502 5.6 8.1
8.4
 4.2
3.9
 5.0
4.3
 5.5
 4.2
 4.2
16 LOC4329234 probable diaminopimelate decarboxylase, chloroplastic 4329234 OSNPB_020440000 5.6 5.6
 5.6
 4.1
3.6
 1.9
1.3
 2.0
1.5
 1.1
 1.4
1.0
 3.8
17 LOC4347821 cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 4347821 Os09g0556500 5.6 4.9
 6.3
 6.2
 5.6
4.3
 5.6
3.0
 5.1
 4.4
 3.1
18 LOC4335309 UPF0307 protein ECA0281 4335309 Os04g0251262 5.5 5.7
 5.4
 4.6
 2.5
 2.4
 3.6
 4.0
 3.4
19 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 5.4 4.8
 6.1
 3.4
 2.9
2.1
 4.0
2.5
 5.3
 1.8
 4.1
20 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 5.4 6.5
 4.4
 3.9
 5.2
4.8
 4.4
3.2
 4.3
 4.1
 5.4
21 LOC4332779 putative tRNA pseudouridine synthase 4332779 Os03g0338600 5.4 5.3
 5.6
 3.1
 2.7
2.2
 3.0
2.1
 1.9
 1.6
 2.1
1.2
22 LOC4325986 protein ABCI7, chloroplastic 4325986 Os01g0127300 5.4 5.3
 5.6
 6.9
 2.4
 3.2
 2.7
 3.2
2.6
 4.2
23 LOC4331268 uncharacterized LOC4331268 4331268 Os02g0833400 5.4 4.4
 6.4
 9.2
 4.0
3.1
 5.1
4.0
 5.6
 3.3
2.6
 2.4
24 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 5.4 5.6
 5.1
 6.7
 5.0
 4.8
 5.1
 4.8
 4.3
25 LOC4351999 cysteine desulfurase 1, chloroplastic 4351999 Os12g0287300 5.3 6.1
 4.6
 4.1
 3.9
3.0
 3.7
2.0
 3.6
 3.3
 1.6
26 LOC4328236 50S ribosomal protein L3, chloroplastic 4328236 Os02g0137200 5.2 5.2
 5.3
 4.2
 3.0
2.5
 2.8
2.1
 5.3
 2.6
 1.8
27 LOC4332652 30S ribosomal protein S1, chloroplastic 4332652 Os03g0315800 5.2 5.9
 4.5
 6.6
 5.9
5.5
 4.7
4.3
 5.0
2.6
 4.1
3.1
 4.9
28 LOC4332087 DEAD-box ATP-dependent RNA helicase 47B-like 4332087 OSNPB_030219700 5.2 5.2
 5.1
 6.2
 4.5
2.8
 4.2
2.2
 4.8
 4.4
 3.5
29 RA1 rice albino1 4339847 Os06g0103600 5.2 4.3
 6.0
 7.5
 3.6
 3.1
 4.8
 2.0
1.8
 3.5
30 LOC4328965 chloroplast processing peptidase 4328965 Os02g0267000 5.1 4.3
 6.0
 6.2
 5.8
4.1
 5.3
3.0
 3.0
 2.5
1.2
 3.3
31 LOC4342685 aminopeptidase P2 4342685 Os07g0205700 5.1 4.2
 6.0
 3.9
 5.2
 5.7
 3.2
 1.4
 2.9
32 LOC4332231 probable 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic 4332231 OSNPB_030245100 5.1 4.8
 5.4
 4.5
0.6
 1.8
0.5
 2.3
0.5
 4.2
 1.4
 1.8
33 LOC4325387 cell division protein FtsY homolog, chloroplastic 4325387 Os01g0958100 5.1 4.3
 6.0
 7.6
 2.1
 3.1
 5.5
 2.3
 2.3
34 LOC4324458 thioredoxin Y, chloroplastic-like 4324458 OSNPB_010963400 5.1 4.7
 5.6
 4.8
-0.3
 3.2
2.0
 2.1
0.9
 0.9
 2.1
0.8
 4.1
35 LOC4334632 transcription termination/antitermination protein NusG 4334632 Os03g0825500 5.1 4.7
 5.5
 5.4
 4.3
 2.8
 5.2
 1.6
 2.4
36 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 5.1 4.4
 5.7
 3.8
 3.6
 4.2
 5.3
4.1
 3.8
2.7
 3.5
37 LOC4351050 peptide chain release factor APG3, chloroplastic 4351050 Os11g0657100 5.1 4.2
 6.0
 7.1
 4.6
3.1
 3.8
2.9
 7.7
 -0.6
 5.0
38 LOC4338498 chlorophyll synthase, chloroplastic-like 4338498 OSNPB_050349700 5.1 4.9
 5.2
 3.3
 4.1
3.6
 4.4
3.5
 5.6
 2.3
-1.7
 2.9
39 LOC4333848 30S ribosomal protein S13, chloroplastic 4333848 Os03g0704000 5.0 5.3
 4.8
 3.2
 3.2
2.4
 3.9
2.6
 4.0
 3.2
2.1
 3.8
40 LOC4352460 nucleoside diphosphate kinase 2, chloroplastic 4352460 Os12g0548300 5.0 6.4
 3.6
 5.3
 2.2
0.8
 3.5
2.1
 4.8
2.0
 4.3
 2.2
41 LOC4344710 nucleolar GTP-binding protein 1 4344710 Os08g0158900 4.9 6.0
 3.8
 5.0
 4.2
 4.4
 3.5
 0.6
 2.5
42 LOC4340044 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic 4340044 Os06g0136800 4.9 4.8
 5.0
 4.7
 3.9
2.3
 3.1
2.9
 3.4
 3.5
 2.2
43 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 4.9 4.5
 5.3
 2.5
 3.6
3.4
 3.8
3.5
 5.6
 2.0
 4.1
44 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 4.9 5.2
 4.6
 4.7
 3.6
3.5
 4.9
4.5
 7.4
 6.6
 3.4
45 LOC4328118 glutamate--tRNA ligase, chloroplastic/mitochondrial 4328118 Os02g0121000 4.9 5.1
 4.7
 4.9
 4.6
2.6
 4.9
3.4
 8.1
 1.5
 3.6
46 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 4.9 5.5
 4.2
 3.9
 3.6
3.4
 3.5
2.7
 4.1
 3.8
 2.8
47 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 4.9 5.3
 4.4
 4.2
3.2
 5.3
3.5
 3.7
2.5
 6.1
2.2
 2.5
1.7
 3.8
2.3
48 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 4.8 5.0
 4.7
 4.6
 5.6
4.7
 6.5
5.2
 5.0
 2.2
 4.1
49 LOC4350686 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like 4350686 OSNPB_110544800 4.8 5.6
 3.9
 6.7
 4.3
3.6
 5.4
5.2
 4.9
 1.4
 4.0
50 WP1 white panicle1 4342467 Os07g0163500

5.3
 3.6
 4.7
 5.7
 2.2
 3.2
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