Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4342554   pentatricopeptide repeat-containing protein At4g20740 
 osa-r.5   4342554   pentatricopeptide repeat-containing protein At4g20740 
 osa-m.8   4342554   pentatricopeptide repeat-containing protein At4g20740 
 ath-u.4   EMB3131   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.4   102662754   pentatricopeptide repeat-containing protein At4g20740 
 gma-u.4   100788816   pentatricopeptide repeat-containing protein At4g20740 
 sly-u.4   101245985   pentatricopeptide repeat-containing protein 
 ppo-u.4   7460213   pentatricopeptide repeat-containing protein At4g20740 
 mtr-u.4   11444480   pentatricopeptide repeat-containing protein At4g20740 

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Top 50 coexpressed genes to 4342554 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4120   Ubiquitin mediated proteolysis  1 149 -
 osa4144   Endocytosis  1 163 -

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osa:LOC4342554 (pentatricopeptide repeat-containing protein At4g20740) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4342554
osa-r.5
for
4342554
osa-m.8
for
4342554
ath-u.4
for
EMB3131
gma-u.4
for
102662754
gma-u.4
for
100788816
sly-u.4
for
101245985
ppo-u.4
for
7460213
mtr-u.4
for
11444480
1 LOC4345277 protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog 4345277 Os08g0326100 4.3 2.8
 5.9
 5.6
 1.5
0.7
 3.3
1.4
 1.7
 2.7
0.4
 -0.0
2 LOC4347932 protein SCAI homolog 4347932 Os09g0573200 3.8 -0.0
 7.7
 -0.7
 0.8
0.3
 0.2
-0.4
 1.6
 0.3
 3.0
3 LOC4344961 VIN3-like protein 2 4344961 Os08g0220600 3.7 3.2
 4.1
 0.5
 1.6
0.7
 1.4
1.3
 0.2
-0.6
 1.8
0.2
 0.6
-0.8
4 LOC4334787 putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial 4334787 Os03g0849700 3.7 4.0
 3.3
0.8
 1.5
 0.2
 1.3
 1.2
5 LOC4336423 pentatricopeptide repeat-containing protein At1g77360, mitochondrial 4336423 Os04g0520900 3.6 0.6
 6.6
2.2
 3.1
-1.3
6 LOC4325126 uncharacterized LOC4325126 4325126 Os01g0262700 3.6 2.4
 4.8
 -0.5
 -1.1
 -0.7
 -1.3
 0.3
 -0.1
7 LOC9270848 uncharacterized LOC9270848 9270848 Os01g0541000 3.5 1.2
 5.7





8 LOC4341015 embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein 4341015 Os06g0471100 3.5 0.8
 6.2
 2.5
 -1.1
 -1.6
-1.3
 -0.4
9 LOC4333379 pentatricopeptide repeat-containing protein At3g53700, chloroplastic 4333379 Os03g0597200 3.5 2.8
 4.1
 3.6
 3.4
 4.4
 0.9
 1.9
 0.9
10 LOC4342280 uncharacterized LOC4342280 4342280 Os07g0120700 3.3 1.8
 4.9
 1.3
 1.4
 0.6
 -0.1
 2.6
 3.0
11 LOC4336096 probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic 4336096 Os04g0466100 3.3 4.2
 2.4
 1.8
 1.2
0.5
 2.0
0.5
 -0.9
 1.0
 2.5
12 LOC4341387 histone deacetylase 1-like 4341387 Os06g0583400 3.3 1.9
 4.7
 0.4
 2.3
-0.2
 1.3
-0.0
 -0.3
 0.3
-0.7
 1.5
1.0
13 LOC4336092 probable RNA-dependent RNA polymerase 2 4336092 OSNPB_040465700 3.3 2.6
 4.0
 0.3
 2.1
1.0
 3.1
0.9
 1.3
 2.1
 0.7
14 LOC4330211 F-box protein At5g51370 4330211 Os02g0658500 3.2 2.6
 3.8
 1.4
1.4
 3.8
3.1
 4.1
4.0
 1.8
-0.3
 1.5
0.9
 1.8
0.9
15 LOC4342696 CTD small phosphatase-like protein 2 4342696 Os07g0207700 3.2 0.3
 6.1
 -0.4
 0.9
0.4
 1.6
0.4
 1.2
 0.4
0.3
 1.5
16 LOC4327524 exocyst complex component EXO70B1 4327524 Os01g0827500 3.2 3.3
 3.0
 0.3
-0.3
 1.7
0.9
 1.5
0.7
 0.2
 0.7
0.2
 1.6
0.9
17 LOC4349304 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic-like 4349304 Os10g0548900 3.0 4.5
 1.6
 5.1
 2.4
2.2
 3.2
3.2
 1.3
 0.9
 1.9
18 LOC4325943 protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 4325943 Os01g0714100 3.0 3.0
 3.1
 2.8
-0.2
 3.2
2.7
 2.8
2.0
 1.9
1.4
 1.7
1.6
 2.8
1.8
19 LOC9268482 pentatricopeptide repeat-containing protein At5g42310, chloroplastic 9268482 Os06g0710800 3.0 3.1
 2.9





20 LOC4336993 protein FAR1-RELATED SEQUENCE 5 4336993 Os04g0615900 3.0 3.3
 2.7





21 LOC9268167 ruBisCO large subunit-binding protein subunit alpha 9268167 Os09g0563300 2.9 2.4
 3.4
 4.1
0.1
 1.0
0.9
 1.7
1.5
 2.4
0.3
 0.5
0.1
 -0.4
-0.8
22 LOC4334563 uncharacterized LOC4334563 4334563 Os03g0816300 2.9 3.1
 2.7





23 LOC4332202 uncharacterized LOC4332202 4332202 Os03g0240400 2.9 2.8
 3.1
 3.5
 3.8
 3.8
3.3
 1.1
24 LOC9271013 protein FAR1-RELATED SEQUENCE 9 9271013 Os11g0244900 2.9 4.0
3.9
2.8
 3.7
3.4
 4.1
4.0
 4.1
2.2
 2.0
1.1
 3.5
3.1
25 LOC4342361 uncharacterized LOC4342361 4342361 Os07g0137900 2.9 1.2
 4.6
 0.9
 4.2
3.0
 3.6
3.5
 2.0
 1.5
 3.1
26 LOC4351860 uncharacterized LOC4351860 4351860 Os12g0239000 2.9 2.3
 3.4
 0.7
 0.8
0.5
 1.1
1.1
 0.4
 1.4
0.7
 3.3
27 LOC4345494 disease resistance protein RGA5-like 4345494 Os08g0396700 2.9 1.4
 4.3





28 LOC4348899 putative pentatricopeptide repeat-containing protein At3g23330 4348899 Os10g0477200 2.9 3.0
 2.8





29 LOC4352779 cationic amino acid transporter 1 4352779 Os12g0613200 2.9 1.0
 4.7
 0.8
 3.4
2.4
 2.4
1.6
 1.3
 2.9
2.4
 3.0
30 LOC4345288 protein EMSY-LIKE 3 4345288 Os08g0328300 2.8 4.4
 1.2
 1.5
1.0
 2.1
2.0
 1.9
1.4
 2.9
1.8
 1.0
0.9
 1.7
1.3
31 LOC4332288 protein FAR1-RELATED SEQUENCE 6 4332288 Os03g0255000 2.8 3.6
 2.1





32 LOC4328094 pentatricopeptide repeat-containing protein At2g01860 4328094 Os02g0118000 2.8 3.8
 1.9
 1.9
 -0.2
-1.5
 0.9
-0.4
 1.8
 0.2
 0.7
33 LOC4328786 pentatricopeptide repeat-containing protein At1g51965, mitochondrial 4328786 2.8 1.9
 3.7
 4.3
 2.2
 3.1
 2.1
 3.5
 2.0
34 LOC4327066 probable serine/threonine-protein kinase At1g54610 4327066 Os01g0201000 2.8 4.3
-0.6
 1.1
0.6
 1.0
0.9
 1.3
0.0
 0.9
0.9
 1.3
35 LOC9269461 uncharacterized LOC9269461 9269461 2.7 0.7
 4.7





36 LOC9270948 ultraviolet-B receptor UVR8 9270948 Os04g0226400 2.7 0.7
 4.6





37 LOC107276144 uncharacterized LOC107276144 107276144 Os03g0412900 2.7 3.9






38 LOC9271155 protein Rf1, mitochondrial 9271155 Os04g0351333 2.7 1.0
 4.4





39 LOC107275294 pentatricopeptide repeat-containing protein At4g02750 107275294 Os12g0289800 2.7 3.8






40 LOC9267658 uncharacterized protein At5g41620 9267658 Os06g0507900 2.7 3.8
0.6
-0.5
 1.6
0.9
 2.5
0.9
 0.8
0.6
 1.4
0.9
 1.0
0.1
41 LOC4333737 E3 ubiquitin-protein ligase UPL7 4333737 Os03g0683900 2.6 1.1
 4.1
 0.7
 2.0
1.4
 1.1
1.0
 1.5
 0.8
 3.4
42 LOC4351981 lysine-specific demethylase REF6 4351981 Os12g0279100 2.6 3.4
 1.9





43 LOC4333146 ubiquitin carboxyl-terminal hydrolase 12 4333146 Os03g0424000 2.6 2.4
 2.8





44 LOC4332241 brefeldin A-inhibited guanine nucleotide-exchange protein 2 4332241 Os03g0246800 2.6 3.0
 2.3
 0.8
-1.1
 2.3
2.1
 2.2
1.9
 1.1
 1.8
0.3
 1.7
1.7
45 LOC4351063 pentatricopeptide repeat-containing protein At4g14050, mitochondrial 4351063 Os11g0661000 2.6 2.1
 3.2
 2.7
 0.8
 1.7
 1.1
0.3
46 LOC4341090 pentatricopeptide repeat-containing protein At4g13650 4341090 Os06g0493801 2.6 3.7






47 LOC4346858 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4346858 Os09g0363100 2.6 3.6
 1.6
 2.5
 0.3
 1.2
 0.2
 1.2
 2.1
48 LOC9271442 protein FAR1-RELATED SEQUENCE 12 9271442 Os01g0519860 2.6 3.8

-1.1
 -1.4

2.6
2.5
49 LOC4344729 pentatricopeptide repeat-containing protein At4g22760 4344729 Os08g0162200 2.6 2.3
 2.9
 2.1

2.4
 1.5
 1.7
50 LOC4345655 pentatricopeptide repeat-containing protein At3g47530 4345655 Os08g0434000 2.6 1.6
 3.6
 1.6
 0.8
 1.9
 1.0
0.1
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