Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4342680   zeta-carotene desaturase, chloroplastic/chromoplastic 
 osa-r.5   4342680   zeta-carotene desaturase, chloroplastic/chromoplastic 
 osa-m.8   4342680   zeta-carotene desaturase, chloroplastic/chromoplastic 
 ath-u.4   ZDS   zeta-carotene desaturase 
 gma-u.4   100776502   zeta-carotene desaturase, chloroplastic/chromoplastic 
 gma-u.4   100816122   zeta-carotene desaturase, chloroplastic/chromoplastic 
 sly-u.4   zds   zeta-carotene desaturase 
 ppo-u.4   18098943   zeta-carotene desaturase, chloroplastic/chromoplastic 
 ppo-u.4   7473341   zeta-carotene desaturase, chloroplastic/chromoplastic 
 mtr-u.4   11415648   zeta-carotene desaturase, chloroplastic/chromoplastic 

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Top 50 coexpressed genes to 4342680 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa630   Glyoxylate and dicarboxylate metabolism  4 72 4.79
 osa450   Selenocompound metabolism  2 16 3.29
 osa900   Terpenoid backbone biosynthesis  2 52 2.27
 osa260   Glycine, serine and threonine metabolism  2 64 2.09
 osa1200   Carbon metabolism  3 273 -

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osa:LOC4342680 (zeta-carotene desaturase, chloroplastic/chromoplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4342680
osa-r.5
for
4342680
osa-m.8
for
4342680
ath-u.4
for
ZDS
gma-u.4
for
100776502
gma-u.4
for
100816122
sly-u.4
for
zds
ppo-u.4
for
18098943
ppo-u.4
for
7473341
mtr-u.4
for
11415648
1 LOC4331854 15-cis-phytoene desaturase, chloroplastic/chromoplastic 4331854 OSNPB_030184000 9.7 10.5
 8.8
 8.5
 4.9
3.7
 4.9
0.9
 9.4
 1.8
 2.3
 9.0
2 LOC4324524 inner membrane protein PPF-1, chloroplastic 4324524 Os01g0151200 5.7 5.2
 6.2
 5.1
 5.6
4.9
 5.3
4.4
 5.2
 2.2
0.9
 1.1
0.4
 2.8
3 LOC4339792 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic 4339792 Os05g0592100 5.5 5.2
 5.9
 6.7
 5.2
4.5
 3.5
2.3
 7.0
 2.8
 1.9
 2.7
4 LOC4335871 protein GrpE 4335871 Os04g0431100 5.4 7.7
 3.2
 1.6
 2.3
 2.5
 -0.1
 1.2
 -0.5
 1.0
5 LOC4345464 uncharacterized LOC4345464 4345464 Os08g0387500 5.3 5.2
 5.4
 5.1
 3.5
3.4
 3.6
2.7
 4.6
 3.3
 2.0
 0.4
6 LOC4338452 chaperone protein dnaJ A7A, chloroplastic-like 4338452 OSNPB_050334400 5.3 7.0
 3.6
 5.4
2.8
 4.8
3.5
 4.3
4.2
 3.7
 3.5
3.0
 2.2
1.7
 2.4
7 LOC4342113 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 4342113 OSNPB_060725900 5.2 5.8
 4.7
 8.4
6.6
 4.2
2.9
 3.3
2.8
 7.3
 2.5
2.0
 2.1
0.8
 2.3
8 LOC4344164 ferredoxin-dependent glutamate synthase, chloroplastic-like 4344164 OSNPB_070658400 5.1 5.9
 4.3
 5.0
2.0
 5.7
4.5
 5.0
4.6
 5.4
 2.6
1.1
 2.3
0.6
 3.1
9 LOC4329578 2-Cys peroxiredoxin BAS1, chloroplastic-like 4329578 OSNPB_020537700 5.1 6.1
 4.0
 1.9
1.2
 4.5
4.1
 4.4
4.2
 4.6
2.0
 2.8
2.3
 1.7
0.6
 1.9
1.8
10 LOC4346247 probable L-ascorbate peroxidase 4, peroxisomal 4346247 OSNPB_080549100 5.0 6.0
 4.0
 3.4
0.0
 4.0
4.0
 3.8
2.4
 2.6
0.2
 2.8
0.8
 2.1
1.1
 2.5
0.0
11 LOC4339689 translation initiation factor IF-2, chloroplastic 4339689 Os05g0575300 5.0 4.8
 5.1
 5.9
 4.6
3.9
 3.5
2.8
 3.9
 2.6
2.5
 2.2
1.1
 4.6
12 LOC4347153 uncharacterized LOC4347153 4347153 Os09g0436900 4.9 5.8
 4.0
 3.2
 0.8
 1.1
 4.1
 2.5
 2.4
 1.0
13 LOC4347913 probable anion transporter 4, chloroplastic 4347913 OSNPB_090570400 4.8 4.6
 5.1
 3.5
2.0
 3.7
3.0
 3.3
2.2
 3.9
2.0
 1.3
0.9
 1.4
0.5
 1.1
0.9
14 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 4.8 3.5
 6.2
 2.7
 5.4
3.2
 6.0
3.5
 3.0
 2.6
0.9
 0.7
0.6
 3.6
15 LOC4328147 3-isopropylmalate dehydratase large subunit, chloroplastic 4328147 Os02g0125100 4.8 5.8
 3.8
 0.7
 4.0
3.2
 2.4
1.4
 2.6
-3.1
 3.8
 2.4
 -0.2
-1.9
16 LOC4347244 RHOMBOID-like protein 10, chloroplastic 4347244 Os09g0454100 4.8 5.1
 4.4
 -0.9
 0.5
 0.8
 1.1
 1.2
 1.2
 3.0
17 LOC4328186 uncharacterized LOC4328186 4328186 Os02g0129900 4.7 4.7
 4.8
 -0.1
 1.1
 2.0
 2.4
 1.1
 0.9
 0.8
18 LOC4329690 glyoxylate/succinic semialdehyde reductase 1 4329690 Os02g0562700 4.7 5.5
 4.0
 2.8
 0.4
-0.4
 2.1
1.3
 3.2
 2.0
1.8
 1.9
1.7
 2.3
19 LOC4336503 probable ascorbate-specific transmembrane electron transporter 2 4336503 OSNPB_040533500 4.7 3.4
 6.0
 1.0
 0.2
-2.1
 1.6
0.0
 2.4
 1.2
 2.1
 0.3
20 LOC4337051 aminomethyltransferase, mitochondrial 4337051 Os04g0623800 4.7 4.7
 4.7
 4.2
 1.8
0.9
 4.0
1.7
 2.3
 2.4
1.8
 0.9
0.2
 2.6
21 LOC4331512 thiol-disulfide oxidoreductase LTO1 4331512 Os03g0131500 4.7 5.6
 3.8
 2.4
 3.9
 4.2
 2.3
 2.8
 1.6
 1.6
22 LOC4344159 thioredoxin reductase NTRC-like 4344159 OSNPB_070657900 4.6 4.8
 4.5
 4.2
 4.3
4.1
 3.7
3.4
 3.8
-1.3
 2.6
 0.9
 2.6
23 LOC4326153 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 4326153 OSNPB_010106900 4.6 5.5
 3.6
 7.0
 1.7
1.3
 1.7
1.0
 4.5
 4.2
3.1
 3.2
3.2
 8.8
0.9
24 LOC4351686 3'(2'),5'-bisphosphate nucleotidase-like 4351686 OSNPB_120183300 4.6 4.9
 4.3
 0.2
 2.2
2.1
 1.6
1.2
 3.6
 3.7
1.5
 2.6
1.1
 0.5
25 LOC4351854 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4351854 Os12g0236900 4.6 5.1
 4.0
 4.0
 2.4
1.6
 2.2
2.2
 4.0
 2.1
 2.8
 1.8
26 LOC4351999 cysteine desulfurase 1, chloroplastic 4351999 Os12g0287300 4.5 6.7
 2.3
 3.9
 4.1
3.9
 3.0
3.0
 8.9
 2.2
 2.3
 2.2
27 LOC4342210 glutamate--glyoxylate aminotransferase 2 4342210 Os07g0108300 4.5 5.9
 3.1
 5.0
4.3
 3.0
1.8
 2.1
1.9
 2.6
-0.0
 2.5
0.4
 1.3
0.7
 2.8
28 LOC4332791 putative GTP diphosphokinase RSH1, chloroplastic 4332791 OSNPB_030340900 4.5 3.7
 5.2
 3.3
 2.4
0.5
 1.4
0.7
 3.3
2.8
 0.3
 -0.2
 1.4
29 LOC4330836 protein DCL homolog, chloroplastic 4330836 Os02g0766301 4.4 4.4
 4.4
 3.1
 4.8
3.0
 3.8
2.2
 3.9
 2.2
1.2
 1.6
-0.2
 0.3
30 LOC4348626 acylamino-acid-releasing enzyme 1-like 4348626 Os10g0415600 4.4 5.4
 3.5
 1.0
 4.3
2.3
 4.2
1.5
 2.4
0.9
 3.4
 1.0
 1.6
1.2
31 LOC4346508 ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like 4346508 OSNPB_090249900 4.4 5.2
 3.6
 3.1
 1.9
1.7
 2.4
2.3
 2.9
 1.1
 1.6
 1.0
32 LOC4326593 50S ribosomal protein L31 4326593 Os01g0633000 4.4 4.8
 4.0
 2.8
 2.3
1.9
 2.6
2.3
 1.8
 1.1
 0.1
 1.0
33 LOC4346388 sodium/proton antiporter 1 4346388 Os09g0109800 4.4 4.2
 4.6
 2.1
 2.7
 2.0
 2.0
 0.1
-0.3
 0.2
-0.8
 2.3
34 LOC4329554 uncharacterized protein At5g03900, chloroplastic 4329554 Os02g0533000 4.4 3.9
 4.9
 5.6
 5.3
3.6
 3.7
3.2
 2.8
 2.4
 3.6
 0.8
35 LOC4351682 histone deacetylase 14 4351682 Os12g0182700 4.4 2.9
 5.8
 2.0
 1.7
 2.7
 3.5
 1.6
 1.1
 2.0
36 LOC4329911 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like 4329911 OSNPB_020603800 4.4 4.8
 3.9
 6.4
 4.0
2.1
 4.5
1.8
 10.4
 2.5
1.0
 4.5
2.2
 6.4
37 LOC4351875 stromal 70 kDa heat shock-related protein, chloroplastic 4351875 Os12g0244100 4.3 4.5
 4.1
 3.6
3.0
 6.2
4.0
 3.7
2.8
 2.5
1.7
 2.0
1.5
 1.3
0.1
 3.5
38 LOC4329941 outer envelope pore protein 37, chloroplastic 4329941 Os02g0608900 4.3 4.6
 3.9
 2.9
 3.9
 3.5
 3.0
 3.1
1.3
 2.8
-0.0
 1.1
39 LOC4333987 thioredoxin-like protein AAED1, chloroplastic 4333987 Os03g0729200 4.3 4.9
 3.6
 4.3
 3.2
2.7
 4.1
3.2
 5.0
 1.8
 2.5
 2.1
40 LOC4342133 uncharacterized LOC4342133 4342133 Os06g0728500 4.3 5.1
 3.4






41 LOC4347051 uncharacterized LOC4347051 4347051 Os09g0413700 4.3 4.7
 3.8
 1.7
 1.4
0.7
 1.7
1.2
 3.9
 0.4
 0.8
 -0.1
42 LOC9266147 alanine--tRNA ligase, chloroplastic/mitochondrial-like 9266147 OSNPB_060245800 4.2 3.8
 4.6
 4.6
 4.9
4.0
 5.6
5.1
 3.9
 1.0
 1.0
 3.0
43 LOC4342685 aminopeptidase P2 4342685 Os07g0205700 4.2 5.3
 3.1
 3.3
 4.4
 4.2
 5.3
 2.5
 1.9
 2.0
44 LOC4345241 CBS domain-containing protein CBSX1, chloroplastic 4345241 Os08g0313200 4.2 4.9
 3.5
 1.7
0.9
 1.0
0.9
 1.9
1.6
 4.7
3.8
 2.2
1.5
 2.6
0.9
 3.4
-1.1
45 LOC4328431 peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic 4328431 Os02g0168700 4.2 4.7
 3.7
 1.1
 1.9
 1.6
 1.8
 0.1
 0.5
 1.1
46 SNAT1 serotonin N-acetyltransferase 1, chloroplastic-like 4339123 OSNPB_050481000 4.2 4.0
 4.3
 2.6
 1.6
 1.9
 3.9
 -0.3
-0.4
 0.5
-0.1
 2.2
47 LOC4338057 thioredoxin-like 2, chloroplastic 4338057 OSNPB_050200100 4.1 4.0
 4.3
 2.8
-0.8
 5.5
3.4
 5.2
3.4
 3.5
1.5
 2.8
2.6
 3.0
1.5
 3.1
48 LOC4324427 protein Mpv17 4324427 Os01g0730800 4.1 3.2
 5.0
 2.0
 1.3
 0.7
 3.3
 2.6
 1.5
 2.2
49 LOC4351828 chaperone protein ClpC2, chloroplastic-like 4351828 OSNPB_120230100 4.1 4.8
 3.4
 6.9
1.0
 4.3
3.1
 4.6
2.6
 5.3
1.7
 4.1
3.1
 2.7
2.0
 2.3
1.7
50 LOC4330811 methionine aminopeptidase 1D, chloroplastic/mitochondrial 4330811 Os02g0761700 4.1 4.5
 3.7
 2.5
 4.6
 5.5
 2.2
 2.9
 2.3
 1.8
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