Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4343537   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 osa-r.5   4343537   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 osa-m.8   4343537   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 ath-u.4   AT3G46870   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   100798492   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 gma-u.4   100306428   pentatricopeptide repeat-containing protein 
 sly-u.4   101247961   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 ppo-u.4   7468604   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 mtr-u.4   25492548   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 

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Top 50 coexpressed genes to 4343537 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  4 336 2.27
 osa3440   Homologous recombination  3 54 3.70
 osa240   Pyrimidine metabolism  2 62 2.12
 osa3008   Ribosome biogenesis in eukaryotes  2 90 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4343537 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4343537
osa-r.5
for
4343537
osa-m.8
for
4343537
ath-u.4
for
AT3G46870
gma-u.4
for
100798492
gma-u.4
for
100306428
sly-u.4
for
101247961
ppo-u.4
for
7468604
mtr-u.4
for
25492548
1 LOC4334688 probable RNA 3'-terminal phosphate cyclase-like protein 4334688 Os03g0833700 7.1 5.4
 8.8
 1.4
 1.7
 1.7
 1.3
 1.9
1.7
 3.0
2 LOC4352795 p21-activated protein kinase-interacting protein 1-like 4352795 Os12g0615900 6.6 4.0
 9.1
 1.3
 2.2
1.1
 3.7
2.6
 2.5
 2.8
 4.3
3 LOC4325781 pentatricopeptide repeat-containing protein At4g01990, mitochondrial 4325781 Os01g0301000 5.9 4.1
 7.7





4 LOC4334285 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like 4334285 OSNPB_030775300 5.8 4.3
 7.2
 -0.2
 1.3
1.2
 1.1
1.0
 0.7
 0.9
 1.8
5 LOC4339580 50S ribosomal protein L21, mitochondrial 4339580 Os05g0557800 5.7 4.2
 7.2
 1.3
 2.4
1.1
 3.0
2.4
 2.4
 2.2
 4.7
6 LOC4336738 uncharacterized LOC4336738 4336738 Os04g0576500 5.6 4.0
 7.3





7 LOC4328187 upstream activation factor subunit spp27 4328187 Os02g0130000 5.5 4.5
 6.4
 3.0
2.3
 1.3
0.5
 3.4
1.6
 2.0
1.0
 2.4
1.9
 4.1
1.4
8 LOC4345316 grpE protein homolog 2, mitochondrial 4345316 Os08g0338700 5.4 4.3
 6.5
 3.3
1.1
 3.7
3.2
 5.2
4.8
 2.8
1.8
 2.3
1.5
 4.2
2.4
9 LOC4344789 DNA polymerase I A, chloroplastic-like 4344789 OSNPB_080175300 5.4 2.3
 8.5
 1.9
0.7
 2.7
1.1
 1.7
1.7
 0.0
 0.5
-0.9
 1.4
1.4
10 LOC4326881 pentatricopeptide repeat-containing protein At4g38150 4326881 Os01g0546500 5.4 3.1
 7.7
 0.7
 2.9
1.5
 2.5
1.2
 2.6
 1.0
 2.4
1.8
11 LOC4345281 GMP synthase [glutamine-hydrolyzing] 4345281 Os08g0326600 5.4 4.9
 5.8
 1.4
 2.6
1.7
 3.8
2.9
 1.3
 2.6
 2.7
12 LOC4342672 uncharacterized LOC4342672 4342672 Os07g0202900 5.4 4.2
 6.5
 0.5
 2.5
2.4
 3.3
3.2
 2.9
 2.2
 4.9
13 LOC4331976 elongator complex protein 5 4331976 Os03g0201700 5.3 4.0
 6.6
 1.2
 1.5
0.5
 3.3
0.5
 2.8
 1.6
0.1
 4.0
14 LOC4343805 pentatricopeptide repeat-containing protein At4g21705, mitochondrial 4343805 Os07g0598500 5.3 4.0
 6.6
 1.4
 2.7
1.3
 3.8
0.2
 1.4
0.6
 2.5
1.8
 3.2
3.0
15 LOC4325084 DNA repair RAD52-like protein 1, mitochondrial 4325084 5.3 3.5
 7.0
 1.2
 2.0
 1.3
 0.5
 0.5
 1.9
16 LOC4330405 uncharacterized LOC4330405 4330405 Os02g0697200 5.2 6.6
 3.9
1.6
1.5
 3.6
2.5
 1.6
 0.4
 3.3
17 LOC4331447 33 kDa ribonucleoprotein, chloroplastic 4331447 Os03g0123200 5.2 5.2
 5.1





18 LOC4333677 acidic leucine-rich nuclear phosphoprotein 32-related protein 2-like 4333677 OSNPB_030668900 5.1 3.8
 6.5





19 LOC4327104 50S ribosomal protein L3-2, chloroplastic 4327104 Os01g0251100 5.1 4.3
 5.9
 1.6
 3.0
2.1
 5.5
4.7
 2.3
 2.3
1.5
 3.8
2.6
20 LOC4325739 uridine 5'-monophosphate synthase-like 4325739 OSNPB_010951200 5.1 4.4
 5.8
 0.6
 0.9
-0.4
 0.4
0.4
 -0.1
 0.9
0.6
 2.9
2.2
21 LOC4325041 DNA repair protein recA homolog 3, mitochondrial 4325041 Os01g0901200 5.1 3.2
 6.9
 1.2
 1.7
1.2
 1.3
1.0
 0.5
 1.4
1.3
 2.8
2.6
22 LOC4339555 uncharacterized LOC4339555 4339555 Os05g0554500 5.0 5.4
 4.6
 1.3
 1.0
0.8
 2.2
0.9
 2.7
 2.0
 0.4
23 LOC4350082 DAG protein, chloroplastic 4350082 Os11g0216400 4.9 3.8
 6.0





24 LOC4345071 aspartate carbamoyltransferase, chloroplastic-like 4345071 OSNPB_080248800 4.8 4.1
 5.4
 1.0
 2.3
1.5
 3.0
2.9
 1.1
 0.2
 2.9
0.6
25 LOC4350250 RRP15-like protein 4350250 Os11g0266000 4.8 2.1
 7.4
 0.5
 4.2
0.9
 3.6
1.9
 1.5
 1.9
 1.8
26 LOC4352760 WD repeat-containing protein 75 4352760 Os12g0609800 4.7 2.4
 7.0
 0.2
 2.6
2.0
 3.5
2.8
 0.6
 3.6
1.1
 2.2
27 LOC4344938 GTP-binding protein ERG 4344938 Os08g0207600 4.7 2.3
 7.1
 1.7
 2.1
 3.7
 1.6
 1.8
 2.4
2.2
28 LOC4334044 telomerase Cajal body protein 1 4334044 Os03g0738000 4.7 3.6
 5.8
 2.0
 0.9
 -0.0
 -0.1
 1.9
 1.2
29 LOC4341246 50S ribosomal protein L1 4341246 Os06g0546400 4.7 3.5
 5.8
 1.9
 0.9
0.2
 2.0
1.8
 1.6
 3.2
 3.8
30 LOC4326564 single-stranded DNA-binding protein, mitochondrial 4326564 Os01g0642900 4.6 3.5
 5.8
 1.5
 1.6
 2.5
 0.2
 2.0
 4.3
31 LOC4350305 uncharacterized LOC4350305 4350305 Os11g0293300 4.6 3.0
 6.3
 1.2
-0.8
 1.9
1.7
 1.3
0.8
 1.0
 0.7
0.4
 -0.1
32 LOC4339932 multiple organellar RNA editing factor 2, chloroplastic 4339932 Os06g0116600 4.6 3.6
 5.7
 2.9
0.8
 2.7
-0.0
 3.2
0.3
 2.0
0.7
 1.3
1.2
 1.2
33 LOC4334667 pumilio homolog 24 4334667 Os03g0831100 4.6 2.4
 6.8
 1.1
 2.9
2.6
 2.7
2.6
 0.9
 1.5
1.0
 2.8
34 LOC4340910 uncharacterized protein At2g39795, mitochondrial 4340910 Os06g0326500 4.6 4.6
 4.6





35 LOC4324473 mitochondrial-processing peptidase subunit alpha 4324473 Os01g0966300 4.6 4.5
 4.6





36 LOC4351608 chaperone protein dnaJ GFA2, mitochondrial 4351608 Os12g0168400 4.6 2.6
 6.5
 3.8
 4.7
3.3
 3.9
3.1
 1.5
 0.3
0.3
 2.3
1.4
37 LOC4345238 50S ribosomal protein L15 4345238 Os08g0310100 4.5 2.6
 6.5
 1.9
 1.8
1.7
 4.0
2.9
 1.4
 2.1
1.5
 0.8
0.6
38 LOC4331214 DEAD-box ATP-dependent RNA helicase 48-like 4331214 OSNPB_020826100 4.5 3.5
 5.5
 0.2
 3.0
-0.0
 4.7
-0.2
 1.1
 2.6
1.5
 2.9
39 LOC4350166 CCR4-NOT transcription complex subunit 11 4350166 Os11g0240900 4.4 4.9
 4.0
 1.7
 1.1
0.3
 0.8
-1.2
 2.3
 1.1
0.7
 1.2
40 LOC4336229 pentatricopeptide repeat-containing protein At1g06710, mitochondrial 4336229 Os04g0488500 4.4 3.1
 5.7
 0.1
 4.0
0.7
 2.7
0.4
 2.2
 1.2
 4.6
41 LOC4336930 nuclear pore complex protein NUP88 4336930 Os04g0608400 4.4 3.8
 4.9
 -1.6
 0.3
 0.7
 0.1
-0.2
 1.4
0.1
 -0.0
42 LOC4329366 uncharacterized LOC4329366 4329366 Os02g0481000 4.3 3.2
 5.5
 2.0
1.0
 3.1
2.1
 2.3
2.0
 2.3
 3.2
2.0
 3.1
43 LOC4331630 nephrocystin-3 4331630 Os03g0149400 4.3 2.5
 6.2





44 LOC4346171 glycine--tRNA ligase, mitochondrial 1 4346171 Os08g0538000 4.3 5.5
 3.1
 3.3
 1.9
 1.6
 1.6
-0.5
 1.2
-0.5
 2.3
0.2
45 LOC4326607 protein ROOT PRIMORDIUM DEFECTIVE 1 4326607 Os01g0617600 4.3 2.6
 5.9
 1.6
 0.3
 -0.6
 1.9
 0.9
46 LOC4343966 50S ribosomal protein L7/L12 4343966 Os07g0626100 4.3 4.7
 3.8
 0.2
 -0.0
-0.4
 1.3
0.6
 0.7
 1.5
 1.2
47 LOC4333983 DEAD-box ATP-dependent RNA helicase 16-like 4333983 OSNPB_030728800 4.3 4.2
 4.3
 0.7
 1.5
 1.6
 1.1
 2.3
 2.5
48 LOC4325165 RPII140-upstream gene protein 4325165 Os01g0271000 4.2 3.6
 4.9
 0.4
 0.8
 1.6
 1.0
 0.2
 0.6
49 LOC4350746 THUMP domain-containing protein 1 homolog 4350746 Os11g0568600 4.2 4.1
 4.3
 0.9
 1.1
0.4
 1.6
0.6
 3.2
 1.8
1.1
 1.0
50 LOC4346491 DNA-directed RNA polymerase 1B, mitochondrial 4346491 Os09g0246200 4.2 3.8
 4.6
 1.5
0.3
 3.8
2.9
 4.2
3.8
 0.9
0.8
 1.2
0.7
 3.5
2.6
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