Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4343842   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 osa-r.5   4343842   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 osa-m.8   4343842   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 ath-u.4   PNM1   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   100808101   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 gma-u.4   100782387   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 sly-u.4   101259522   pentatricopeptide repeat-containing protein 
 ppo-u.4   18106607   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 mtr-u.4   11442426   pentatricopeptide repeat-containing protein PNM1, mitochondrial 

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Top 50 coexpressed genes to 4343842 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  7 336 5.20
 osa970   Aminoacyl-tRNA biosynthesis  5 70 6.43
 osa3008   Ribosome biogenesis in eukaryotes  3 86 3.10
 osa3013   Nucleocytoplasmic transport  3 109 2.80
 osa280   Valine, leucine and isoleucine degradation  1 46 -

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osa:LOC4343842 (pentatricopeptide repeat-containing protein PNM1, mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4343842
osa-r.5
for
4343842
osa-m.8
for
4343842
ath-u.4
for
PNM1
gma-u.4
for
100808101
gma-u.4
for
100782387
sly-u.4
for
101259522
ppo-u.4
for
18106607
mtr-u.4
for
11442426
1 LOC4324661 RGG repeats nuclear RNA binding protein A 4324661 Os01g0721900 7.6 6.8
 8.5
 3.9
-0.1
 6.8
6.1
 5.8
5.0
 6.6
5.9
 3.9
1.8
 5.6
3.0
2 LOC4327779 exportin-2 4327779 Os01g0235400 7.5 6.4
 8.6
 2.1
 4.5
4.1
 5.4
4.7
 4.0
 2.7
2.7
 4.5
3 LOC4338508 importin subunit beta-1 4338508 Os05g0353400 7.3 7.9
 6.8
 2.5
1.1

3.4
 3.2
2.3
4 LOC4329211 T-complex protein 1 subunit delta 4329211 Os02g0332200 7.2 6.4
 8.0
 4.9
 9.0
8.6
 8.3
7.9
 4.3
 5.0
4.3
 5.0
5 LOC4329957 pentatricopeptide repeat-containing protein At1g79540 4329957 Os02g0611400 7.0 7.6
 6.4
 8.1
 4.3
4.3
 5.2
4.1
 5.5
 4.9
 6.4
6 LOC4340910 uncharacterized protein At2g39795, mitochondrial 4340910 Os06g0326500 7.0 6.7
 7.2





7 LOC4344029 H/ACA ribonucleoprotein complex subunit 4 4344029 Os07g0636000 6.9 7.3
 6.5
 8.8
 5.4
4.9
 7.5
5.7
 5.7
 6.4
6.2
 5.6
8 LOC4325458 uncharacterized protein At2g39795, mitochondrial 4325458 Os01g0143300 6.9 7.1
 6.6
 8.1
5.3
 3.8
3.5
 4.1
4.1
 4.6
 4.4
3.9
 3.4
2.3
9 LOC4339634 eukaryotic translation initiation factor 3 subunit D 4339634 Os05g0566500 6.7 5.9
 7.4
 7.5
6.1
 9.4
9.1
 10.1
9.9
 5.4
 2.5
0.6
 6.0
10 LOC4327989 uncharacterized LOC4327989 4327989 Os02g0102400 6.5 5.6
 7.5
 7.7
 5.9
4.0
 3.5
3.4
 6.2
 5.8
 5.3
11 LOC4331046 putative uncharacterized protein DDB_G0290521 4331046 Os02g0803200 6.4 5.4
 7.3
 5.9
3.1
 5.6
 7.0
 4.6
 7.1
 6.7
12 LOC4342672 uncharacterized LOC4342672 4342672 Os07g0202900 6.3 5.7
 6.9
 3.8
 5.4
2.9
 6.3
3.1
 3.1
 2.9
 1.9
13 LOC4342563 60S ribosomal protein L4-1 4342563 Os07g0180900 6.2 5.1
 7.3
 4.8
4.5
 7.1
6.1
 6.2
6.0
 6.6
4.9
 3.1
3.0
 6.9
4.3
14 LOC4340823 39S ribosomal protein L46, mitochondrial 4340823 Os06g0300600 6.2 6.7
 5.7
 1.8
 2.2
1.9
 2.6
2.0
 2.6
1.1
 2.0
 3.4
2.2
15 LOC4341310 T-complex protein 1 subunit epsilon 4341310 Os06g0562600 6.2 6.0
 6.3
 3.8
 5.0
4.3
 4.4
3.7
 4.4
 3.4
1.0
 5.0
16 LOC4351657 eukaryotic translation initiation factor 2 subunit gamma 4351657 Os12g0176800 6.1 7.5
 4.8
 4.1
 5.9
4.0
 5.4
4.6
 5.5
5.3
 2.1
1.7
 6.6
5.0
17 LOC4333283 polyadenylate-binding protein RBP45 4333283 Os03g0569900 6.1 6.0
 6.3
 0.3
0.0
 3.0
2.6
 3.3
1.8
 2.9
0.9
 1.7
1.1
 2.4
1.1
18 LOC4329832 ribosome biogenesis protein BRX1 homolog 2 4329832 Os02g0591800 6.1 7.8
 4.4
 4.7
4.5
 3.4
1.8
 3.0
1.7
 4.9
 1.3
0.8
 3.6
2.9
19 LOC4339552 50S ribosomal protein L7/L12 4339552 Os05g0554100 5.9 5.5
 6.3
 4.3
 2.6
2.2
 2.8
2.5
 2.7
0.8
 4.1
 4.2
4.1
20 LOC4345238 50S ribosomal protein L15 4345238 Os08g0310100 5.9 4.2
 7.6
 4.7
 3.6
3.4
 4.9
3.3
 4.1
 4.9
4.0
 2.7
2.6
21 LOC4338500 ERBB-3 BINDING PROTEIN 1 4338500 Os05g0350500 5.9 5.3
 6.5
 8.7
 5.3
5.2
 6.7
5.5
 4.8
3.9
 2.1
1.6
 3.3
2.6
22 LOC4330354 aspartate--tRNA ligase 2, cytoplasmic 4330354 Os02g0686400 5.9 6.0
 5.7
 0.8
0.7
 3.6
3.4
 6.0
3.1
 3.4
 2.3
 3.4
23 LOC4326654 pentatricopeptide repeat-containing protein At4g36680, mitochondrial 4326654 Os01g0616600 5.8 5.6
 5.9





24 LOC4337802 T-complex protein 1 subunit zeta 1 4337802 Os05g0147400 5.7 5.7
 5.8
 2.2
2.2
 3.8
3.3
 3.6
2.6
 5.1
4.6
 2.5
1.6
 4.1
25 LOC4352748 eukaryotic translation initiation factor 2 subunit gamma 4352748 Os12g0607100 5.7 7.0
 4.5
 4.1
 5.9
4.0
 5.4
4.6
 5.5
5.3
 2.1
1.7
 6.6
5.0
26 LOC4328041 pentatricopeptide repeat-containing protein At2g37230 4328041 Os02g0110400 5.7 5.9
 5.5
 7.9
 6.6
2.9
 5.8
3.2
 5.2
 4.3
 6.4
27 LOC4348843 54S ribosomal protein L19, mitochondrial 4348843 Os10g0466200 5.7 4.4
 7.0
 2.4
 1.6
1.0
 1.3
0.5
 2.0
 1.8
 1.9
28 LOC4330066 pentatricopeptide repeat-containing protein At4g36680, mitochondrial 4330066 Os02g0633200 5.7 5.6
 5.8
 7.4
6.3
 4.1
3.7
 5.6
4.8
 6.5
5.0
 5.4
4.8
 5.9
2.1
29 LOC4344162 30S ribosomal protein S9, mitochondrial 4344162 Os07g0658200 5.6 5.6
 5.6
 7.8
 5.0
4.6
 5.1
4.5
 4.7
 3.8
 6.1
30 LOC4349332 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial 4349332 Os10g0552900 5.5 3.8
 7.2
 2.9
-0.5
 1.3
0.2
 0.4
0.0
 2.2
1.1
 4.6
1.9
 1.6
1.0
31 LOC4336930 nuclear pore complex protein NUP88 4336930 Os04g0608400 5.5 4.0
 7.0
 -0.1
 1.7
 1.2
 0.7
0.7
 0.6
0.4
 2.1
32 LOC4333345 lysine--tRNA ligase-like 4333345 OSNPB_030586800 5.5 6.3
 4.7
 4.0
 3.7
1.9
 3.7
2.0
 4.6
-0.1
 3.0
0.9
 5.6
33 LOC9270869 isoleucine--tRNA ligase, cytoplasmic 9270869 Os06g0645400 5.5 5.2
 5.7
 1.7
 2.9
2.5
 2.5
1.5
 2.7
 0.2
-0.0
 3.1
34 LOC4333574 GTPase LSG1-2 4333574 Os03g0647500 5.5 6.0
 5.0
 3.4
-0.6
 4.5
4.4
 4.8
3.9
 2.2
 -0.9
 0.9
35 LOC4338555 pentatricopeptide repeat-containing protein At1g10270 4338555 Os05g0365500 5.5 4.9
 6.1
 4.8
3.4
 4.2
3.7
 4.5
4.5
 2.9
 4.5
3.1
 2.6
36 LOC4324129 pentatricopeptide repeat-containing protein At1g61870, mitochondrial 4324129 Os01g0793200 5.5 7.4
 3.5
 13.4
3.7
 8.1
 7.1
 6.3
 5.8
 5.7
0.5
37 LOC4325065 60S ribosomal protein L10a 4325065 Os01g0860300 5.4 4.9
 6.0
 3.7
3.0
 3.2
3.0
 3.9
3.1
 4.1
2.0
 3.9
3.1
 5.2
4.1
38 LOC4334800 elongation factor Tu, mitochondrial 4334800 Os03g0851100 5.4 6.1
 4.8
 5.1
 5.0
3.5
 2.8
2.6
 5.8
5.2
 6.1
6.0
 2.6
39 LOC4339570 T-complex protein 1 subunit beta 4339570 Os05g0556700 5.4 5.3
 5.5
 3.9
 5.3
5.1
 4.9
3.2
 3.1
 4.4
2.2
 6.2
5.3
40 LOC4343808 pentatricopeptide repeat-containing protein At1g26460, mitochondrial 4343808 Os07g0599000 5.4 4.7
 6.0
 5.2
 6.3
4.2
 5.7
5.0
 5.3
 4.9
 4.6
41 LOC4326881 pentatricopeptide repeat-containing protein At4g38150 4326881 Os01g0546500 5.3 6.8
 3.9
 1.3
 2.3
1.3
 2.0
1.1
 2.5
 4.5
 3.2
3.2
42 LOC4333677 acidic leucine-rich nuclear phosphoprotein 32-related protein 2-like 4333677 OSNPB_030668900 5.3 4.8
 5.8





43 LOC4334490 T-complex protein 1 subunit theta 4334490 Os03g0804800 5.3 5.2
 5.5
 5.4
 4.5
4.5
 3.8
3.2
 4.9
 2.9
2.1
 7.6
3.6
44 LOC4326117 uncharacterized LOC4326117 4326117 Os01g0112100 5.3 6.8
6.2
 2.6
2.2
 3.7
2.3
 3.0
 4.0
 7.6
45 LOC4328137 eukaryotic translation initiation factor 3 subunit C 4328137 5.3 5.4
 5.2
 4.0
 5.1
4.8
 6.3
4.7
 5.3
4.7
 3.1
2.8
 5.6
5.1
46 LOC4337830 histidine--tRNA ligase, cytoplasmic-like 4337830 OSNPB_050150900 5.3 4.5
 6.1
 7.9
 7.6
6.5
 7.2
4.5
 4.8
 4.1
 8.0
47 LOC9270807 small nuclear ribonucleoprotein-associated protein N 9270807 Os07g0166600 5.3 4.0
 6.6
 2.1
0.8
 6.4
6.0
 7.1
5.4
 0.8
 1.2
 3.2
2.7
48 LOC4348464 glutamate--tRNA ligase, cytoplasmic 4348464 Os10g0369000 5.3 4.4
 6.1
 5.1
 3.5
1.5
 4.1
2.1
 2.3
 1.3
0.3
 4.7
49 LOC4342750 protein SLOW WALKER 1 4342750 Os07g0224900 5.2 4.6
 5.9
 8.8
 6.0
5.1
 6.1
6.0
 5.5
 5.0
4.5
 6.1
50 LOC4330585 tRNA (guanine(9)-N1)-methyltransferase 4330585 Os02g0725600 5.2 4.4
 6.1
 2.6
 3.9
2.6
 4.1
4.1
 3.3
 5.6
3.0
 5.3
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