Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4344262   pentatricopeptide repeat-containing protein At3g18020 
 osa-r.5   4344262   pentatricopeptide repeat-containing protein At3g18020 
 osa-m.8   4344262   pentatricopeptide repeat-containing protein At3g18020 
 ath-u.4   AT3G18020   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   106796792   pentatricopeptide repeat-containing protein At3g18020 
 sly-u.4   101244857   pentatricopeptide repeat-containing protein 
 ppo-u.4   7462491   pentatricopeptide repeat-containing protein At3g18020 
 mtr-u.4   11416962   pentatricopeptide repeat-containing protein At3g18020 

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Top 50 coexpressed genes to 4344262 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3018   RNA degradation  1 112 -

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osa:LOC4344262 (pentatricopeptide repeat-containing protein At3g18020) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4344262
osa-r.5
for
4344262
osa-m.8
for
4344262
ath-u.4
for
AT3G18020
gma-u.4
for
106796792
sly-u.4
for
101244857
ppo-u.4
for
7462491
mtr-u.4
for
11416962
1 LOC4337840 pentatricopeptide repeat-containing protein At2g13600 4337840 Os05g0153400 5.9 5.3
 6.5




2 LOC4351284 putative pentatricopeptide repeat-containing protein At3g08820 4351284 Os12g0109300 5.4 4.6
 6.1
 7.3
 9.0
 2.9
 4.2
1.5
 5.5
3 LOC4338264 putative pentatricopeptide repeat-containing protein At1g10330 4338264 Os05g0271900 5.2 3.8
 6.7
 1.6
 6.0
 1.8

4 LOC9267687 pentatricopeptide repeat-containing protein At5g43790 9267687 Os12g0128200 5.0 3.6
 6.3
 2.6
2.3
3.3
5 LOC4351584 pentatricopeptide repeat-containing protein At4g15720 4351584 Os12g0163600 4.9 2.9
 7.0



2.3
6 LOC4339896 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 4339896 Os06g0112000 4.9 2.9
 6.9
 4.4
 4.8
2.9
 2.8
 2.2
 4.3
0.3
7 LOC4342804 pentatricopeptide repeat-containing protein At4g21065 4342804 Os07g0239600 4.9 2.8
 6.9
6.5
4.6
 2.9

8 LOC4327814 pentatricopeptide repeat-containing protein At3g16610 4327814 Os01g0977400 4.7 3.2
 6.3
5.0
3.2
 3.6
9 LOC4333964 COMPASS-like H3K4 histone methylase component WDR5A 4333964 Os03g0725400 4.6 2.7
 6.6
 1.0
0.2
 1.7
1.3
 1.1
0.4
 0.7
0.5
 1.1
0.4
10 LOC9272023 pentatricopeptide repeat-containing protein At4g02820, mitochondrial 9272023 Os12g0527900 4.5 3.3
 5.8
 1.3
 2.7
 1.6
 0.3
 0.4
11 LOC4328419 pentatricopeptide repeat-containing protein At4g20770 4328419 Os02g0167200 4.5 3.4
 5.6
5.8
 2.2
4.6
12 LOC4332013 putative pentatricopeptide repeat-containing protein At1g02420 4332013 Os03g0208600 4.5 2.1
 6.8
5.8
 1.0
 0.6
 5.5
13 LOC4344477 protein Rf1, mitochondrial 4344477 Os08g0110200 4.4 1.9
 6.9




14 LOC4327795 F-box only protein 7 4327795 Os01g0530500 4.3 3.2
 5.3




15 LOC4333891 zinc finger protein VAR3, chloroplastic 4333891 Os03g0712200 4.3 1.9
 6.6
3.1
 -0.2
 0.1
 3.8
16 LOC4328111 methyltransferase-like protein 23 4328111 Os02g0120300 4.2 2.1
 6.4
 0.2
 1.0
 1.6
1.8
17 LOC4325580 pentatricopeptide repeat-containing protein At1g08070, chloroplastic 4325580 Os01g0715900 4.1 3.4
 4.8




18 LOC4342414 non-structural maintenance of chromosomes element 3 homolog 4342414 Os07g0151300 4.1 1.9
 6.4
 -0.4
 -0.2
-1.3
 0.7
 0.3
 0.8
19 LOC4349672 non-structural maintenance of chromosomes element 1 homolog 4349672 Os11g0130300 4.1 1.6
 6.6
 1.3
 -0.4
 -0.9
 -1.3
 0.3
20 LOC4325865 pentatricopeptide repeat-containing protein At1g69290 4325865 Os01g0788900 4.0 3.7
 4.3
 3.4
2.4
 2.0
 2.0
 1.4
 2.9
1.6
21 LOC4339275 single-stranded DNA-binding protein, mitochondrial 4339275 Os05g0509700 3.8 2.2
 5.4
 1.0
 1.1
0.7
 1.0
 1.7
 5.0
22 LOC4339672 pentatricopeptide repeat-containing protein At5g39680 4339672 Os05g0572900 3.8 2.8
 4.8
 5.5
 4.5
 2.2
2.6
23 LOC4345374 uncharacterized LOC4345374 4345374 Os08g0360000 3.8 3.3
 4.3
 5.5
 0.8
 0.5
 0.9
 1.5
24 LOC4334286 pentatricopeptide repeat-containing protein At2g22070 4334286 Os03g0775400 3.8 1.3
 6.2
 8.1
 5.9
 4.7

25 LOC4345420 putative pentatricopeptide repeat-containing protein At3g25970 4345420 Os08g0375800 3.7 3.4
 4.1
 5.0
 4.6
 2.5

26 LOC4350437 short integuments 2, mitochondrial 4350437 Os11g0447300 3.7 1.6
 5.9
 2.1
 1.7
1.2
 0.7
0.4
 1.5
 2.1
27 LOC4341594 nuclear intron maturase 4, mitochondrial 4341594 Os06g0634100 3.7 1.5
 5.9
-0.1
 1.1
 3.5
 0.3
28 LOC4333040 pentatricopeptide repeat-containing protein At4g33990 4333040 Os03g0396200 3.7 1.2
 6.2
 6.5
 5.3
 0.6
 2.4
 2.8
29 LOC4344190 putative pentatricopeptide repeat-containing protein At5g40405 4344190 Os07g0662700 3.7 2.7
 4.6




30 LOC107278384 pentatricopeptide repeat-containing protein At4g02750 107278384 Os04g0432800 3.7 5.1





31 LOC4345325 pentatricopeptide repeat-containing protein At4g39530 4345325 Os08g0340900 3.7 1.8
 5.5
 8.2
 4.1
 4.0

32 LOC4332493 uncharacterized LOC4332493 4332493 Os03g0288800 3.6 3.9
 3.3
 1.7
 3.6
 2.2
 0.6
 3.7
33 LOC4344519 exosome complex component RRP41-like 4344519 Os08g0116800 3.6 2.1
 5.0
 0.7
 1.8
1.1
 0.2
 0.1
-0.4
 1.0
34 LOC4345655 pentatricopeptide repeat-containing protein At3g47530 4345655 Os08g0434000 3.6 4.3
 2.8
 5.9
 5.5
 2.1
6.1
35 LOC4328126 pentatricopeptide repeat-containing protein At1g02060, chloroplastic 4328126 Os02g0121900 3.6 2.2
 5.0
 3.6
2.7
 2.6
 0.2
36 LOC4343048 uncharacterized LOC4343048 4343048 Os07g0423000 3.5 2.1
 4.9
 1.9
-0.2
 2.8
2.4
 0.8
 1.8
1.8
 2.7
1.6
37 LOC4343805 pentatricopeptide repeat-containing protein At4g21705, mitochondrial 4343805 Os07g0598500 3.5 3.7
 3.3
 1.5
 4.0
-0.5
 3.4
1.1
 1.0
0.2
 2.7
1.7
38 LOC4324326 pentatricopeptide repeat-containing protein At1g05600 4324326 Os01g0913800 3.5 2.3
 4.7
 2.4
 1.7
 2.4
 0.6
 -0.0
-0.1
39 LOC4330315 pentatricopeptide repeat-containing protein At1g74900, mitochondrial 4330315 Os02g0679200 3.5 2.0
 5.0
1.7
1.4
 1.6
 3.2
 3.0
40 LOC4348020 MEIOTIC F-BOX protein MOF-like 4348020 Os10g0126700 3.4 2.3
 4.5




41 LOC4338742 uncharacterized LOC4338742 4338742 Os05g0403600 3.4 4.6
 2.1
 1.9
-0.2
 2.8
2.4
 0.8
 1.8
1.8
 2.7
1.6
42 LOC4350011 F-box protein At4g09920 4350011 Os11g0202200 3.4 3.0
 3.7




43 LOC4334236 pentatricopeptide repeat-containing protein At5g46460, mitochondrial 4334236 Os03g0767700 3.3 2.3
 4.3
 -0.8



44 LOC4333330 pentatricopeptide repeat-containing protein At3g24000, mitochondrial 4333330 Os03g0582100 3.3 2.0
 4.6




45 LOC4327598 putative pentatricopeptide repeat-containing protein At5g40405 4327598 Os01g0814300 3.3 1.8
 4.8

1.4

46 LOC4345759 uncharacterized LOC4345759 4345759 Os08g0459100 3.3 2.9
 3.7
 2.1
 0.1
-0.4
 0.4
 0.7
0.6
 2.9
-1.0
47 LOC4344238 pentatricopeptide repeat-containing protein At4g32430, mitochondrial 4344238 Os07g0670000 3.3 2.9
 3.6
 6.2
2.7
3.3
48 LOC4328019 putative pentatricopeptide repeat-containing protein At1g68930 4328019 Os02g0106300 3.3 2.4
 4.1
 7.6
 5.0
 3.2
 3.6
 2.5
0.4
49 LOC4325084 DNA repair RAD52-like protein 1, mitochondrial 4325084 3.2 3.3
 3.2
 0.7
 0.3
 0.4
 -0.4
 1.7
50 LOC4325056 uncharacterized LOC4325056 4325056 Os01g0858700 3.2 3.7
 2.7
 -0.1
 0.9
0.6
 1.1
 -0.2
 1.1
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