Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4344752   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 osa-r.5   4344752   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 osa-m.8   4344752   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 ath-u.4   CRR6   chlororespiratory reduction 6 
 gma-u.4   100810072   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 gma-u.4   100526934   uncharacterized LOC100526934 
 sly-u.4   101254005   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 ppo-u.4   18099882   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 mtr-u.4   11438187   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 

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Top 50 coexpressed genes to 4344752 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa740   Riboflavin metabolism  1 21 -
 osa906   Carotenoid biosynthesis  1 32 -
 osa260   Glycine, serine and threonine metabolism  1 67 -
 osa630   Glyoxylate and dicarboxylate metabolism  1 76 -
 osa195   Photosynthesis  2 77 -

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osa:LOC4344752 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4344752
osa-r.5
for
4344752
osa-m.8
for
4344752
ath-u.4
for
CRR6
gma-u.4
for
100810072
gma-u.4
for
100526934
sly-u.4
for
101254005
ppo-u.4
for
18099882
mtr-u.4
for
11438187
1 LOC4325238 NAD(P)H-quinone oxidoreductase subunit O, chloroplastic 4325238 Os01g0959900 7.0 6.4
 7.5
 3.4
 2.6
 2.0
 2.7
 2.1
 2.5
2 LOC4352264 NAD(P)H-quinone oxidoreductase subunit U, chloroplastic 4352264 Os12g0498500 6.5 6.7
 6.3
 1.8
 4.0
1.6
 4.1
2.3
 3.9
 1.9
 4.6
3 LOC4333746 ferredoxin C 2, chloroplastic 4333746 Os03g0685000 6.1 5.8
 6.4
 1.9
 2.5
2.1
 1.9
1.3
 1.4
 2.1
 1.5
4 LOC4332516 uncharacterized LOC4332516 4332516 Os03g0293100 5.9 5.1
 6.7
 4.4
 0.6
0.6
 1.4
1.0
 0.3
 0.9
 1.4
5 LOC4331127 28 kDa ribonucleoprotein, chloroplastic 4331127 Os02g0815200 5.7 5.3
 6.1
 2.7
 -0.1
-0.2
 0.7
0.5
 1.1
 2.3
1.1
 1.1
6 LOC4342069 uncharacterized LOC4342069 4342069 Os06g0715200 5.7 4.0
 7.3
2.7
1.7
 2.4
1.5
 1.3
 0.8
 1.5
7 LOC4340162 uncharacterized LOC4340162 4340162 Os06g0152800 5.7 5.7
 5.7





8 LOC4349277 uncharacterized LOC4349277 4349277 Os10g0545100 5.5 5.1
 5.9
 1.7
 0.9
0.6
 1.0
0.1
 2.9
1.8
 0.6
 1.8
9 LOC4330307 uncharacterized LOC4330307 4330307 Os02g0677600 5.5 3.7
 7.2
 3.4
 2.3
0.9
 2.9
1.5
 1.1
 0.9
 1.0
10 LOC4325486 probable zinc metalloprotease EGY2, chloroplastic 4325486 OSNPB_010142100 5.5 4.9
 6.0
 3.8
 1.8
1.7
 1.2
1.1
 0.9
 1.5
 2.3
11 LOC4336633 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic 4336633 Os04g0557000 5.3 4.5
 6.2





12 LOC4334100 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic 4334100 Os03g0747700 5.3 3.9
 6.7
 3.3
 1.7
0.3
 2.4
0.3
 2.0
 0.5
 0.4
13 LOC4343859 uncharacterized LOC4343859 4343859 Os07g0607200 5.1 4.2
 6.1
2.4
1.1
 2.5
0.7
 3.9
 1.1
 2.5
14 LOC4337135 uncharacterized LOC4337135 4337135 Os04g0635700 5.0 4.0
 6.1
 2.7
 3.8
3.4
 3.5
2.2
 4.2
 1.6
0.4
 0.5
15 LOC4338729 UPF0603 protein Os05g0401100, chloroplastic-like 4338729 OSNPB_050401100 5.0 5.1
 5.0
 0.5
 2.6
1.1
 2.8
1.0
 2.3
 2.5
0.6
 -0.1
16 LOC4342001 thylakoid lumenal 16.5 kDa protein, chloroplastic 4342001 Os06g0705100 5.0 4.9
 5.1
 1.3
 2.8
1.7
 3.2
2.1
 1.8
 1.2
1.0
 1.7
17 LOC4324744 uncharacterized LOC4324744 4324744 Os01g0862200 5.0 4.5
 5.4
 2.8
 2.2
1.3
 2.2
1.8
 2.7
 1.7
 1.3
18 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 4.9 5.1
 4.8
 2.3
 2.8
2.2
 2.4
1.3
 0.5
 2.5
0.4
 1.5
19 LOC4335625 violaxanthin de-epoxidase, chloroplastic 4335625 Os04g0379700 4.9 5.9
 4.0
 3.3
 2.0
1.3
 2.5
2.0
 3.7
 2.2
 2.8
20 LOC4348287 uncharacterized LOC4348287 4348287 Os10g0213700 4.8 4.3
 5.3
 2.5
 2.3
 3.3
 1.7
 0.7
 2.6
21 LOC4324472 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 4324472 Os01g0966200 4.7 4.1
 5.3
 1.9
 2.3
2.3
 2.8
1.5
 1.5
 0.6
 2.1
22 LOC4330396 uncharacterized LOC4330396 4330396 Os02g0694800 4.7 4.9
 4.4
 1.4
 1.6
 2.2
 1.7
 1.9
 1.3
23 LOC4333370 uncharacterized LOC4333370 4333370 Os03g0595300 4.6 4.9
 4.2
 1.4
0.0
 2.9
1.8
 2.8
2.1
 4.1
 2.5
 2.0
24 LOC4349114 glycine cleavage system H protein, mitochondrial 4349114 OSNPB_100516100 4.5 6.2
 2.8
 3.1
2.3
 3.6
2.8
 3.6
3.6
 2.6
2.1
 1.4
1.0
 1.0
25 LOC4333999 uncharacterized LOC4333999 4333999 Os03g0731100 4.5 5.1
 3.9
 2.3
 2.7
 2.8
 2.1
 0.3
 5.7
2.1
26 LOC4338746 uncharacterized LOC4338746 4338746 Os05g0404400 4.5 4.3
 4.7
 5.0
 2.0
1.7
 2.5
2.1
 2.1
 1.7
 1.9
27 LOC4326021 protein LOW PSII ACCUMULATION 1, chloroplastic 4326021 Os01g0358300 4.5 2.7
 6.3
 4.4
 1.8
0.4
 2.1
0.1
 1.8
 2.0
 2.4
28 LOC4340391 putative peroxiredoxin Q, chloroplastic 4340391 OSNPB_060196300 4.5 3.9
 5.0
 0.4
 2.5
2.0
 3.3
2.7
 1.3
 2.0
0.9
 3.5
29 LOC4327543 uncharacterized LOC4327543 4327543 Os01g0805200 4.4 3.5
 5.4
 2.4
 2.3
2.2
 2.3
1.7
 2.1
 1.0
 2.1
30 LOC4339170 uncharacterized LOC4339170 4339170 Os05g0490900 4.4 4.5
 4.3
 1.9
 2.1
0.9
 2.5
2.3
 2.0
 2.0
1.2
 0.5
31 LOC4342438 RNA-binding protein CP33, chloroplastic 4342438 Os07g0158300 4.4 3.4
 5.4
 3.7
 1.8
1.5
 1.8
1.0
 2.9
 2.9
2.2
 2.4
1.5
32 LOC4329542 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4329542 Os02g0529900 4.4 3.4
 5.4





33 LOC4332227 protein SPA, chloroplastic 4332227 Os03g0244000 4.4 3.8
 4.9
 0.5
 2.3
0.1
 2.6
0.4
 -0.0
 0.7
0.2
 1.5
34 LOC4339230 uncharacterized LOC4339230 4339230 Os05g0500400 4.3 4.8
 3.9
 3.4
 1.5
1.4
 1.2
0.8
 4.1
 1.5
 1.8
35 LOC4339115 serine/threonine-protein kinase STN8, chloroplastic 4339115 Os05g0480000 4.3 4.8
 3.8
 5.0
 3.1
1.7
 3.5
2.9
 2.1
 1.7
1.3
 3.8
1.8
36 LOC4337264 uncharacterized LOC4337264 4337264 Os04g0657900 4.2 3.2
 5.3
 3.8
 1.3
 1.0
 3.6
 1.0
 1.6
37 LOC4330704 photosynthetic NDH subunit of subcomplex B 4, chloroplastic 4330704 Os02g0744000 4.2 5.2
 3.2
 0.4
 4.0
3.9
 4.3
3.9
 4.1
 0.8
 0.5
38 LOC4324908 rhodanese-like domain-containing protein 4A, chloroplastic 4324908 Os01g0889800 4.2 4.5
 4.0
 2.2
 3.8
2.7
 3.2
2.1
 1.2
 0.8
 0.9
39 LOC4344522 28 kDa ribonucleoprotein, chloroplastic 4344522 Os08g0117100 4.2 4.2
 4.2
 2.5
 0.9
-0.3
 -0.1
-0.3
1.0
40 LOC4331057 uncharacterized LOC4331057 4331057 Os02g0804400 4.2 4.2
 4.1
 5.9
 2.5
 1.6
 0.6
 1.1
 2.8
41 LOC4328296 protein CHLOROPLAST IMPORT APPARATUS 2 4328296 Os02g0148000 4.2 4.2
 4.1
 0.4
0.2
 1.5
0.9
 0.2
0.2
 3.2
 1.3
1.0
 0.6
-3.0
42 LOC4330626 zinc finger protein CONSTANS-LIKE 16 4330626 Os02g0731700 4.1 4.1
 4.2
 2.2
0.7
 0.8
0.8
 1.8
1.2
 2.0
1.2
 1.5
0.9
 1.8
1.7
43 LOC4347400 uncharacterized LOC4347400 4347400 Os09g0481800 4.1 3.1
 5.2
 3.4
 2.0
1.6
 1.9
1.4
 4.1
 1.1
 2.0
44 LOC4339890 pentatricopeptide repeat-containing protein At5g27270 4339890 Os06g0111300 4.1 3.8
 4.4
 1.1
 0.3
 0.1
 0.0
 0.4
0.3
 0.7
45 LOC4330746 photosynthetic NDH subunit of lumenal location 4, chloroplastic 4330746 Os02g0751600 4.1 3.9
 4.4
 2.6
 3.5
 3.0
1.4
 3.3
46 LOC4329953 protein TAB2 homolog, chloroplastic-like 4329953 Os02g0610800 4.1 4.0
 4.3
 3.9
 3.7
2.1
 3.0
3.0
 1.5
 2.2
1.2
 2.1
1.4
47 LOC4324275 50S ribosomal protein 5, chloroplastic 4324275 Os01g0278900 4.1 4.9
 3.3





48 LOC4348208 pentatricopeptide repeat-containing protein MRL1, chloroplastic 4348208 Os10g0181200 4.1 5.3
 2.9
 3.1
 3.0
2.3
 2.9
1.9
 1.5
 1.0
 1.8
49 LOC4327627 protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic-like 4327627 OSNPB_010798500 4.1 2.9
 5.3
 2.9
 1.9
1.4
 2.2
2.1
 1.9
 1.0
 3.8
50 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 4.1 2.9
 5.3
 2.5
 0.8
 0.3
 1.5
 1.8
1.7
 1.5
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