Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4344777   clp protease adapter protein ClpF, chloroplastic 
 osa-r.5   4344777   clp protease adapter protein ClpF, chloroplastic 
 osa-m.8   4344777   clp protease adapter protein ClpF, chloroplastic 
 osa-u.4   9269022   clp protease adapter protein ClpF, chloroplastic 
 ath-u.4   AT2G03390   uvrB/uvrC motif-containing protein 
 gma-u.4   100794023   clp protease adapter protein ClpF, chloroplastic 
 gma-u.4   100783767   clp protease adapter protein ClpF, chloroplastic 
 sly-u.4   101251088   clp protease adapter protein ClpF, chloroplastic 
 ppo-u.4   7492899   clp protease adapter protein ClpF, chloroplastic 
 mtr-u.4   11408922   clp protease adapter protein ClpF, chloroplastic 

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Top 50 coexpressed genes to 4344777 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3060   Protein export  2 49 2.32
 osa380   Tryptophan metabolism  1 60 -
 osa230   Purine metabolism  1 91 -
 osa4146   Peroxisome  2 92 -
 osa620   Pyruvate metabolism  1 100 -

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osa:LOC4344777 (clp protease adapter protein ClpF, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4344777
osa-r.5
for
4344777
osa-m.8
for
4344777
osa-u.4
for
9269022
ath-u.4
for
AT2G03390
gma-u.4
for
100794023
gma-u.4
for
100783767
sly-u.4
for
101251088
ppo-u.4
for
7492899
mtr-u.4
for
11408922
1 SNAT1 serotonin N-acetyltransferase 1, chloroplastic-like 4339123 OSNPB_050481000 5.8 5.4
 6.3
 2.5
 2.7
 1.2
 1.6
 1.7
 1.0
0.8
 2.5
2 LOC9272053 chloroplast sensor kinase, chloroplastic 9272053 Os12g0293000 5.6 4.4
 6.7
 5.1
 5.2
 1.7
1.0
 1.5
1.0
 2.3
 2.8
 2.2
3 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 5.5 7.6
 3.4
 1.0
 1.2
 2.0
1.5
 1.7
0.4
 3.0
 3.6
3.3
 3.0
4 LOC4324524 inner membrane protein PPF-1, chloroplastic 4324524 Os01g0151200 5.4 4.8
 6.0
 3.2
 3.1
 2.4
2.2
 0.6
0.1
 5.0
 2.8
2.4
 3.2
5 LOC4325481 protein root UVB sensitive 5 4325481 Os01g0141600 5.1 4.6
 5.6
 3.9
 2.4
 1.6
1.1
 4.5
1.2
 2.2
 1.0
 2.5
6 LOC4345779 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like 4345779 Os08g0463900 4.4 4.9
 3.9
 2.1
 4.8
 0.3
 1.3
 3.3
 1.8
 0.9
7 LOC9269022 clp protease adapter protein ClpF, chloroplastic 9269022 Os01g0764500 4.3 3.8
 4.9
 4.3
4.0
 4.0


8 LOC4336266 uncharacterized LOC4336266 4336266 4.2 3.8
 4.6






9 LOC4343532 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 4343532 OSNPB_070548300 4.2 3.2
 5.2
 0.8
 6.3
 2.3
1.3
 0.9
0.2
 0.4
 2.7
2.2
 1.7
10 LOC4328774 peroxisomal nicotinamide adenine dinucleotide carrier 4328774 Os02g0225000 4.2 2.7
 5.7
 2.1
1.0
1.9
1.7
 1.4
0.9
 0.9
2.1
11 LOC4324367 epoxide hydrolase 1 4324367 Os01g0919700 4.2 3.6
 4.8
 2.6
 3.3
 2.8
 3.0
 1.6
 1.2
 0.2
12 LOC4334877 rhodanese-like domain-containing protein 8, chloroplastic 4334877 Os03g0861700 4.1 4.1
 4.1
 2.5
 0.0
 1.9
 2.5
 0.2
 0.6
 3.0
13 LOC4348990 WAT1-related protein At3g02690, chloroplastic 4348990 Os10g0493900 4.1 4.7
 3.6
 1.9
 4.4
 2.0
1.6
 2.4
2.1
 1.8
 3.2
 2.9
1.0
14 LOC4350825 CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like 4350825 OSNPB_110592400 4.1 5.8
0.6
 3.0
1.4
 1.2
 -0.3
 1.4
 4.5
 2.9
15 LOC4351854 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4351854 Os12g0236900 4.0 5.6
 2.5
 1.8
 3.0
 1.6
0.6
 0.5
0.4
 2.9
 2.1
 4.1
16 LOC9270395 probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 9270395 Os12g0485000 4.0 3.5
 4.5
 1.7
 2.4
 -0.1
 0.9
 0.5
 3.3
 1.4
17 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 3.9 5.5
 2.4
 2.6
1.0
 3.1
 2.4
1.6
 1.3
0.7
 3.2
 1.9
1.6
 2.7
18 LOC4332791 putative GTP diphosphokinase RSH1, chloroplastic 4332791 OSNPB_030340900 3.9 3.2
 4.7
 2.5
 4.8
 2.4
1.0
 1.9
0.3
 3.1
2.4
 0.5
 3.6
19 LOC4329554 uncharacterized protein At5g03900, chloroplastic 4329554 Os02g0533000 3.9 3.5
 4.3
 2.4
 7.9
 1.9
1.4
 3.3
0.7
 1.2
 4.1
 3.1
20 LOC4329761 transcription termination factor MTEF1, chloroplastic 4329761 Os02g0577501 3.9 5.2
 2.6
 0.8
 0.6
0.5
 1.4
1.2
 1.1
1.0
 0.5
0.4
 1.2
0.4
 1.1
-0.3
21 LOC4347128 pentatricopeptide repeat-containing protein At5g10690 4347128 Os09g0431600 3.9 5.4
 2.4
 1.5
 0.1
 0.5
 1.7
 2.1
 0.3
 3.3
22 LOC4330582 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4330582 Os02g0725200 3.9 4.6
 3.1
 2.8
 4.5
 3.1
 1.6
 2.2
 4.0
 1.7
23 LOC4324427 protein Mpv17 4324427 Os01g0730800 3.8 3.0
 4.7
 2.0
 2.3
 2.4
 1.4
 3.1
 2.6
 4.5
24 LOC4345298 uncharacterized LOC4345298 4345298 Os08g0332700 3.8 3.4
 4.2
 2.4
 2.5
 2.4
 2.3
 3.6
 1.1
1.1
 2.0
25 LOC9269015 uncharacterized LOC9269015 9269015 Os09g0448900 3.8 2.8
 4.8
 1.8
 0.7
 1.9
 2.4
 1.1
 1.6
 2.7
26 LOC4350519 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 4350519 Os11g0482400 3.8 5.0
 2.6
 1.4
1.2
-0.2
 1.8
0.8
 2.3
 -0.4
 1.9
27 LOC4351682 histone deacetylase 14 4351682 Os12g0182700 3.8 3.7
 3.9
 2.9
 4.7
 2.9
 2.1
 1.6
 3.1
 4.3
28 LOC4338537 ferrochelatase-2, chloroplastic-like 4338537 OSNPB_050361200 3.8 3.0
 4.5
 1.1
 4.3
 3.3
2.4
 2.0
1.6
 2.7
 4.4
1.3
 3.4
1.2
29 LOC4339851 uncharacterized LOC4339851 4339851 Os06g0104000 3.8 3.0
 4.5
 2.4
 4.3
 3.0
1.5
 1.8
0.9
1.1
 0.3
30 LOC4328182 protein LOW PSII ACCUMULATION 3, chloroplastic 4328182 Os02g0129300 3.7 4.3
 3.1
 0.6
 3.3
 4.8
 5.0
 2.3
 0.5
 3.1
31 LOC4343195 probable plastid-lipid-associated protein 12, chloroplastic 4343195 Os07g0470700 3.7 3.4
 4.0
 2.8
 2.7
 2.4
2.3
 3.2
2.8
 1.4
 0.2
 0.5
32 LOC4343734 transcription termination factor MTERF9, chloroplastic 4343734 Os07g0583200 3.7 3.6
 3.8
 1.1
 0.1
 0.3
-0.2
 -0.3
-0.8
 0.9
 2.8
 2.6
33 LOC4332025 uncharacterized LOC4332025 4332025 Os03g0210700 3.7 4.3
 3.1
 1.1
1.4
-0.0
 2.3
1.4
 2.4
 1.9
 -0.2
34 LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic 4325906 Os01g0673800 3.7 3.8
 3.6
 0.9
 4.3
 2.0
 0.5
 2.3
-0.2
 3.8
 3.5
35 LOC4341010 mitogen-activated protein kinase 11-like 4341010 OSNPB_060367900 3.6 3.7
 3.6
 1.2
0.5
 2.1
-0.1
 1.5
0.8
 1.7
0.8
 1.7
1.5
 1.8
1.3
 2.0
1.8
36 LOC4347096 pentatricopeptide repeat-containing protein At4g30825, chloroplastic 4347096 Os09g0423300 3.6 3.8
 3.5
 3.5
 1.9
 2.1
 2.4
 1.6
 2.1
 1.7
37 LOC9270233 D-lactate dehydrogenase [cytochrome], mitochondrial 9270233 Os07g0163000 3.6 4.6
 2.6
 1.9
 3.8
 1.2
 1.6
 -2.1
 -0.3
 1.2
38 LOC4329472 uncharacterized LOC4329472 4329472 Os02g0515000 3.6 1.7
 5.4
 3.3
 1.2
 1.7
1.2
 4.9
2.9
 2.0
 3.1
 3.3
39 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 3.5 4.3
 2.8
 1.5
 0.3
 0.9
-0.6
 0.9
-1.6
 1.8
 1.0
1.0
 2.4
40 LOC4332686 uncharacterized LOC4332686 4332686 Os03g0322600 3.5 4.2
 2.8
 1.1
 1.3
 2.2
1.8
 1.7
1.7
 2.7
 2.2
 3.1
41 LOC4327866 carboxyl-terminal-processing peptidase 1, chloroplastic 4327866 Os01g0664000 3.5 4.5
1.7
 5.0

0.4
 1.0
 4.3
42 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 3.5 5.5
 1.5
 0.4
 0.6
 1.9
1.2
 1.4
1.4
 3.3
1.8
 2.9
2.5
 2.5
43 LOC4335850 uncharacterized LOC4335850 4335850 Os04g0425100 3.5 4.1
 2.8
 0.4
 1.1
 1.1
-1.4
 0.3
-0.7
 0.7
 0.2
0.1
 0.0
44 LOC4338177 cyclin-A1-4-like 4338177 OSNPB_050237100 3.4 1.7
 5.2
 1.4
0.7
 -0.2
 0.2
0.0
 0.1
-0.4
 -0.3
 -0.2
-0.3
 -1.0
45 LOC9272724 uncharacterized LOC9272724 9272724 Os11g0219000 3.4 3.1
 3.8
 2.4
 5.7

2.9
 0.5
46 wsl5 white stripe leaf5 4337454 Os04g0684500 3.4 3.8
 3.1
 0.9
 3.2
 1.7
1.2
 1.6
0.6
 4.2
1.7
 1.8
0.7
 2.5
47 LOC4348896 pentatricopeptide repeat-containing protein At1g08610 4348896 Os10g0476900 3.4 2.5
 4.3
 2.4





48 LOC4325544 putative RNA-binding protein YlmH 4325544 Os01g0747700 3.4 2.6
 4.3
 2.4
 2.5
 3.8
 4.5
 1.7
 0.8
 3.8
49 LOC4328457 ribosomal RNA large subunit methyltransferase I 4328457 Os02g0173700 3.4 4.8
 2.0
 0.3
 -0.1
 2.1
 -1.1
2.3
 2.2
50 LOC4330670 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 4330670 Os02g0739000 3.4 1.5
 5.3
 2.7
 1.6
 1.2
 -0.9
 1.2
 3.3
 2.1
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