Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4345190   peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic 
 osa-r.5   4345190   peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic 
 osa-m.8   4345190   peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic 
 ath-u.4   AT5G35100   Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 
 gma-u.4   CYP50   peptidyl-prolyl cis-trans isomerase CYP50 
 gma-u.4   CYP55   peptidyl-prolyl cis-trans isomerase CYP55 
 sly-u.4   101256785   peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic 
 ppo-u.4   7479540   peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic 
 mtr-u.4   25488393   peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic 

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Top 50 coexpressed genes to 4345190 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  3 35 4.26
 osa30   Pentose phosphate pathway  1 57 -
 osa53   Ascorbate and aldarate metabolism  1 64 -
 osa40   Pentose and glucuronate interconversions  1 73 -
 osa710   Carbon fixation in photosynthetic organisms  1 77 -

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osa:LOC4345190 (peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4345190
osa-r.5
for
4345190
osa-m.8
for
4345190
ath-u.4
for
AT5G35100
gma-u.4
for
CYP50
gma-u.4
for
CYP55
sly-u.4
for
101256785
ppo-u.4
for
7479540
mtr-u.4
for
25488393
1 LOC4344674 sphingoid long-chain bases kinase 1 4344674 Os08g0152700 4.5 3.0
 6.1





2 LOC4343734 transcription termination factor MTERF9, chloroplastic 4343734 Os07g0583200 4.3 4.0
 4.6
 -0.1
 -0.8
-0.8
 -0.4
-1.0
 1.5
 -0.4
 -0.7
3 LOC4350458 UV-B-induced protein At3g17800, chloroplastic 4350458 Os11g0456100 4.1 3.7
 4.6
 3.0
2.2
 1.6
0.7
 2.0
1.2
 2.6
 -0.0
 -2.0
4 LOC4341657 uncharacterized methyltransferase At2g41040, chloroplastic 4341657 Os06g0646000 4.1 4.2
 4.0
 1.4
 2.2
1.4
 2.9
2.2
 4.4
2.9
 1.0
 0.5
5 LOC4336744 GDSL esterase/lipase At5g41890 4336744 Os04g0577300 4.0 4.5
 3.6


-0.0

6 LOC4331846 SAP-like protein BP-73 4331846 OSNPB_030183100 4.0 4.0
 4.0





7 LOC4329952 uncharacterized LOC4329952 4329952 Os02g0610700 4.0 2.1
 5.8
 4.4
 2.0
 1.7
 2.9
 1.3
0.9
 1.1
8 LOC9270448 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 9270448 Os04g0108300 4.0 5.5
 2.5
 2.2
 3.0
 2.0
 2.8
 0.5
 1.2
9 LOC4339689 translation initiation factor IF-2, chloroplastic 4339689 Os05g0575300 3.9 4.4
 3.4
 0.6
 3.1
3.0
 2.1
1.1
 2.0
 2.0
2.0
 1.3
10 LOC4331070 uncharacterized LOC4331070 4331070 Os02g0806000 3.9 3.6
 4.1
 1.3
 0.9
-0.1
 0.7
0.4
0.3
-0.1
 1.8
11 LOC4324967 probable membrane-associated 30 kDa protein, chloroplastic 4324967 OSNPB_010895100 3.8 3.8
 3.9
 2.3
 3.4
1.9
 3.1
1.8
 3.5
 0.2
-0.1
 1.6
12 LOC4324478 sec-independent protein translocase protein TATC, chloroplastic-like 4324478 OSNPB_010501700 3.8 3.7
 3.9
 4.3
 1.3
1.0
 1.5
0.9
 3.6
 -0.3
 2.1
13 LOC4331761 ribulose-phosphate 3-epimerase, chloroplastic-like 4331761 OSNPB_030169100 3.8 2.9
 4.7
 2.2
 2.4
2.1
 2.5
1.3
 4.5
 1.2
 1.7
14 LOC4337587 uncharacterized LOC4337587 4337587 Os05g0110100 3.8 4.4
 3.2
 3.7
 2.1
0.9
 3.0
1.7
 1.4
 5.8
 0.5
15 LOC4332623 phytochrome B-like 4332623 OSNPB_030309200 3.7 2.9
 4.6
 0.3
0.1
 1.3
0.7
 0.7
0.4
 1.2
-0.3
 1.4
0.2
 1.0
16 LOC4349041 thylakoid lumenal 17.4 kDa protein, chloroplastic 4349041 Os10g0502000 3.7 3.8
 3.6
 4.2
 2.8
1.9
 3.6
2.4
 5.4
 3.3
 1.2
17 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 3.7 4.3
 3.1
 1.3
 3.7
1.7
 6.3
2.6
 4.1
 1.1
 0.8
18 LOC4350785 sec-independent protein translocase protein TATB, chloroplastic-like 4350785 OSNPB_110580800 3.6 4.3
 2.9
 4.2
 0.4
0.3
 1.4
0.7
 3.1
 1.4
1.3
 2.1
19 LOC4337449 AT-hook motif nuclear-localized protein 9 4337449 Os04g0683900 3.6 4.3
 2.9





20 LOC4338731 uncharacterized LOC4338731 4338731 Os05g0401300 3.6 3.6
 3.6
 1.7
 2.0
 1.8
 6.0
 4.2
 0.3
21 LOC4332626 pentatricopeptide repeat-containing protein At3g06430, chloroplastic 4332626 Os03g0309800 3.5 5.0
 2.1
 0.7
 1.7
1.6
 2.7
2.6
 3.3
2.2
 -0.1
-0.9
 1.5
1.2
22 LOC4351270 uncharacterized LOC4351270 4351270 Os12g0106700 3.5 3.3
 3.7





23 LOC4340087 protein HEADING DATE 3B-like 4340087 Os06g0142600 3.5 3.1
 3.9
 0.7
 2.0
0.3
 1.1
0.8
 1.6
0.8
 0.3
-0.4
 0.5
-0.1
24 LOC4335871 protein GrpE 4335871 Os04g0431100 3.5 4.7
 2.3
 2.2
 2.0
 1.1
 1.1
 0.5
 1.4
25 LOC4340271 pentatricopeptide repeat-containing protein At5g48730, chloroplastic 4340271 Os06g0172000 3.5 4.4
 2.6
 0.9
 1.4
 1.0
 -0.2
 -0.9
 1.6
26 LOC4327866 carboxyl-terminal-processing peptidase 1, chloroplastic 4327866 Os01g0664000 3.5 5.0
0.6

2.5
 -0.1
 0.4
27 LOC4343584 protein THYLAKOID FORMATION1, chloroplastic-like 4343584 OSNPB_070558500 3.5 3.5
 3.4
 3.8
 4.1
3.9
 5.5
5.2
 3.5
 1.5
0.1
 1.3
0.2
28 LOC4342155 tetraspanin-18 4342155 Os06g0731400 3.5 4.0
 2.9
 2.5
1.1
 -0.7
-0.8
 -0.4
-0.5
 1.2
 -1.3
 1.4
29 LOC4328080 transcription factor ILR3 4328080 Os02g0116600 3.4 3.8
 3.0





30 LOC4331512 thiol-disulfide oxidoreductase LTO1 4331512 Os03g0131500 3.4 4.3
 2.5
 3.2
 3.4
 4.9
 1.7
 0.2
 1.7
31 LOC4346501 FRIGIDA-like protein 3 4346501 Os09g0248300 3.4 3.2
 3.6
 1.2
 -0.6
-1.1
 -1.0
-1.8
 -0.5
-1.3
 0.2
0.0
 0.3
-0.2
32 LOC4340091 superoxide dismutase [Fe] 2, chloroplastic-like 4340091 OSNPB_060143000 3.4 5.5
 1.3
 -0.3
 1.1
 1.1
 2.5
 0.4
 1.0
33 LOC4327931 ELF3-like protein 2 4327931 Os01g0566100 3.4 3.8
 2.9
 0.7
 2.0
0.3
 1.1
0.8
 1.6
0.8
 0.3
-0.4
 0.5
-0.1
34 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 3.4 3.6
 3.1
 3.0
1.7
 6.1
 9.0
 3.6
1.9
 2.3
1.9
 1.0
35 LOC4334412 pentatricopeptide repeat-containing protein At2g02980, chloroplastic 4334412 Os03g0795200 3.4 3.2
 3.5
 -0.3
 0.1
 0.2
 -0.5
0.3
36 LOC4327178 probable chlorophyll(ide) b reductase NYC1, chloroplastic 4327178 OSNPB_010227100 3.3 3.0
 3.7
 1.5
 1.7
0.8
 1.2
0.1
 2.3
 0.1
 0.9
37 LOC4347571 transcription factor 25 4347571 Os09g0514900 3.3 3.1
 3.6
 0.2
 -0.4
-1.0
 -1.2
-1.6
 -2.2
 -0.3
-1.2
 -0.9
38 LOC4333674 disease resistance protein RGA5-like 4333674 3.3 3.5
 3.2





39 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 3.3 4.2
 2.4
 3.0
1.0
 2.4
2.1
 1.6
1.3
 2.6
0.2
 1.1
-0.0
 1.4
0.9
40 LOC4350241 F-box protein SKIP16 4350241 Os11g0264700 3.3 2.4
 4.2





41 LOC4333437 protein tas 4333437 Os03g0611200 3.3 4.0
 2.6
 2.0
 1.3
 2.2
 2.6
 1.1
 -0.2
42 LOC4347429 OTU domain-containing protein At3g57810 4347429 Os09g0487700 3.3 3.4
 3.1
 1.0
 0.3
-0.4
 1.3
-0.4
0.4
-0.8
 3.0
0.7
43 LOC4351828 chaperone protein ClpC2, chloroplastic-like 4351828 OSNPB_120230100 3.3 3.3
 3.3
 3.0
1.0
 2.4
2.1
 1.6
1.3
 2.6
0.2
 1.1
-0.0
 1.4
0.9
44 LOC4330469 monodehydroascorbate reductase 2, peroxisomal-like 4330469 OSNPB_020707100 3.3 3.0
 3.5
 0.3
 3.4
3.3
 3.1
2.4
 2.4
 0.4
 1.7
45 LOC9266421 uncharacterized LOC9266421 9266421 3.2 2.8
 3.7





46 LOC4349577 uncharacterized LOC4349577 4349577 Os11g0110100 3.2 4.7
1.4
 2.0
1.6
 2.7
1.5
 4.2
 0.6
 1.3
47 LOC4341200 uncharacterized LOC4341200 4341200 Os06g0530300 3.2 4.5
1.7
 1.4
 0.3
 2.7
 0.7
 0.6
48 LOC4347913 probable anion transporter 4, chloroplastic 4347913 OSNPB_090570400 3.2 4.0
 2.4
 1.4
-0.4
 1.3
0.7
 1.2
1.1
 1.8
1.5
 1.6
1.2
 1.3
-0.2
49 LOC4330928 uncharacterized LOC4330928 4330928 Os02g0781700 3.2 4.2
 2.1
 -0.4
-0.8
 0.3
0.3
 0.5
0.4
 -1.8
 -1.4
-1.7
 0.0
50 LOC4326553 dual-specificity RNA methyltransferase RlmN 4326553 Os01g0640800 3.1 4.5
 1.8
 3.1
 1.7
 -0.9
 1.6
 0.8
 0.1
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