Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4345509   uncharacterized LOC4345509 
 osa-r.5   4345509   uncharacterized LOC4345509 
 osa-u.4   107277262   uncharacterized LOC107277262 
 osa-u.4   4346857   uncharacterized LOC4346857 
 osa-u.4   4345507   uncharacterized LOC4345507 
 ath-u.4   SUVH5   SU(VAR)3-9 homolog 5 
 gma-u.4   100803378   histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 
 gma-u.4   100776895   histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 
 sly-u.4   101247436   uncharacterized LOC101247436 
 ppo-u.4   18096889   histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 
 mtr-u.4   11438908   histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 

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Top 50 coexpressed genes to 4345509 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4712   Circadian rhythm - plant  4 35 6.06
 osa906   Carotenoid biosynthesis  1 32 -
 osa4075   Plant hormone signal transduction  1 262 -

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osa:LOC4345509 (uncharacterized LOC4345509) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4345509
osa-r.5
for
4345509
osa-u.4
for
107277262
osa-u.4
for
4346857
osa-u.4
for
4345507
ath-u.4
for
SUVH5
gma-u.4
for
100803378
gma-u.4
for
100776895
sly-u.4
for
101247436
ppo-u.4
for
18096889
mtr-u.4
for
11438908
1 LOC4344399 two-component response regulator-like PRR37 4344399 OSNPB_070695100 3.5 4.7
 0.3
0.0
 1.2
1.0
 1.0
1.0
 -0.2
-0.5
 2.0
1.5
 2.9
2.1
 1.2
 -0.1
-1.4
 1.6
0.7
2 LOC4332464 two-component response regulator-like PRR73 4332464 OSNPB_030284100 3.3 4.7
 0.3
0.0
 1.2
1.0
 1.0
1.0
 -0.2
-0.5
 2.0
1.5
 2.9
2.1
 1.2
 -0.1
-1.4
 1.6
0.7
3 LOC4347644 B-box zinc finger protein 18 4347644 Os09g0527900 3.1 5.1
 0.0
 0.8
 -0.3
 -0.6
-1.0
 -0.8
-0.8
 0.1
0.0
 -0.0
 -0.1
-0.3
 -0.9
4 LOC4324539 protein LNK2 4324539 Os01g0498200 3.0 4.1
 0.1
 0.4
 0.2
 -1.1
 0.4
0.3
 0.8
-0.1
 0.9
 -0.0
-0.1
 -1.0
5 LOC4335984 zeaxanthin epoxidase, chloroplastic-like 4335984 Os04g0448950 2.9 3.7
 0.2
 -0.2
 -0.2
 -1.3
 0.7
-0.6
 0.1
-1.1
 1.7
 -0.1
-1.0
 0.4
-0.2
6 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 2.8 3.5
 -0.1
 -0.2
 0.6
 -0.2
 0.7
0.0
 0.7
0.1
 0.3
 0.5
0.2
 1.0
7 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 2.8 3.4
 0.1
 -0.5
 0.1
 -0.4
 -0.2
-0.7
 0.0
-0.5
 -0.0
 0.0
-0.8
 1.4
8 LOC4344326 cyclic dof factor 2 4344326 Os07g0685000 2.7 4.1
 0.3
0.0
 1.0
0.2
 0.2
0.2
 -0.7
-1.1
 1.4
1.2
 1.3
1.2
 1.6
1.3
 0.5
-0.3
 1.0
0.2
9 LOC4338006 pseudo histidine-containing phosphotransfer protein 2-like 4338006 OSNPB_050186100 2.7 3.9
 1.6
0.8
 1.5
0.8
 1.0
0.9
-1.2
 -0.3


10 LOC4325329 protein GIGANTEA-like 4325329 OSNPB_010182600 2.6 3.3
 0.4
 0.2
 0.7
 -1.2
 1.0
0.4
 0.8
0.3
 0.9
0.4
 -1.4
-1.7
11 LOC4326994 CRS2-associated factor 2, chloroplastic 4326994 OSNPB_010323300 2.6 3.5
 -0.0
 -0.2
 0.5
 2.0
 0.9
 2.0
 0.1
 0.1
 0.5
12 LOC4350249 disease resistance protein RGA5-like 4350249 Os11g0265900 2.5 3.3
 1.1
1.1
 0.7
0.7
 1.3
1.3





13 LOC4344777 clp protease adapter protein ClpF, chloroplastic 4344777 Os08g0172200 2.4 3.4
 0.4
0.1
 -0.6
-0.9
 0.9
-0.1
 -0.3
 0.1
-0.2
 0.7
-0.1
 1.1
 -0.1
 -1.5
14 LOC9269173 uncharacterized LOC9269173 9269173 Os11g0632001 2.4 3.6
 0.5
 0.6
 0.4





15 LOC9266216 protein SRG1 9266216 Os06g0178650 2.4 3.4
 1.6
1.3
 0.2
0.2
 0.7
0.2
 1.2
-0.2
 -0.5
-0.6
 0.2
0.0
 0.5
0.3
 0.8
0.2
 0.7
-0.0
16 LOC107280351 protein FAR1-RELATED SEQUENCE 5-like 107280351 2.4 3.6
 0.8
0.3
 1.6
0.1
 0.2
0.1





17 LOC4332333 mitochondrial phosphate carrier protein 3, mitochondrial 4332333 Os03g0263400 2.4 3.3
 -0.7
-0.8
 0.3
-0.2
 0.1
-0.8
 0.5
-1.1
 -0.6
-1.8
 -0.8
-1.1
 -0.3
-1.5
 1.3
0.2
 -0.9
-1.1
18 LOC4347674 two-component response regulator-like PRR95 4347674 OSNPB_090532400 2.4 2.7
 -0.5
 0.3
 0.9
 -0.8
-1.0
 1.8
1.3
 1.5
1.2
 1.0
0.5
 1.0
-0.0
 -0.4
-0.5
19 LOC4336176 SWI/SNF complex subunit SWI3A 4336176 Os04g0480400 2.3 2.7
 0.8
 1.7
 0.3
 0.8
 2.3
1.7
 2.0
1.7
 0.1
 -0.6
 1.4
20 LOC4349807 protein FAF-like, chloroplastic 4349807 Os11g0153500 2.3 3.3
 0.6
0.3
 -0.3
-0.3
 0.4
-0.2
 0.1
-0.5
 -0.4
-0.4
 0.6
-0.0
 1.0
 -1.0
 0.4
-0.9
21 wsl8 white stripe leaf8 4338875 Os05g0430200 2.3 2.9
 0.7
-0.6
 0.6
-0.5
 0.5
-0.7
 -0.3
 -1.0
-1.3
 -0.2
-0.3
 0.7
 1.5
0.2
 0.8
22 LOC4335071 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 4335071 2.3 2.7
 -0.2
 0.5
 0.4
 -1.0
 1.0
0.8
 1.4
1.1
 0.3
-0.3
 0.7
 2.4
1.4
23 LOC4333004 protein LNK1 4333004 Os03g0387900 2.3 3.5
 -0.2
 0.2
 0.5
 -1.2
 0.8
0.8
 1.6
1.1
 1.6
0.9
 -0.2
 0.2
-1.5
24 LOC4342381 uncharacterized oxidoreductase At1g06690, chloroplastic 4342381 Os07g0142900 2.3 2.9
 0.0
-0.1
 -1.0
-1.1
 0.4
0.4
 -1.1
 -0.2
-0.4
 -0.6
-1.0
 0.1
 -1.1
-2.4
 -0.8
25 LOC4327567 Ribonuclease III domain-containing protein RNC1, chloroplastic 4327567 OSNPB_010810100 2.3 3.1
 -0.3
 0.6
 0.0
 -0.8
 -0.3
-0.8
 -0.0
-0.2
 0.2
 1.5
 -1.0
26 LOC112936653 uncharacterized LOC112936653 112936653 2.3 3.3








27 LOC4327482 zinc finger protein VAR3, chloroplastic 4327482 Os01g0815700 2.3 2.8
 -0.7
 0.9
 0.6
 1.2
 -0.2
-0.5
 0.5
0.3
 1.1
 0.7
 2.4
28 LOC4326959 transcription factor ICE1 4326959 Os01g0928000 2.3 2.9
 0.7
-1.1
 0.7
0.4
 0.1
0.1
 0.1
-1.4
 1.2
0.4
 1.4
0.4
 0.2
-0.8
 0.5
0.1
 0.7
-0.2
29 LOC9270169 tRNA (guanine(37)-N1)-methyltransferase 1 9270169 Os01g0390400 2.3 3.2
 -0.2
 1.1
 1.0
 -0.2
 1.9
0.3
 1.0
0.4
 -0.4
 1.7
 1.7
30 LOC4324854 pentatricopeptide repeat-containing protein At3g46790, chloroplastic 4324854 Os01g0848300 2.3 2.9
 0.2
 1.9
 1.0
 0.3
 0.2
0.0
 0.3
0.1
 0.7
 0.4
 0.9
31 LOC4343652 chaperonin-like RbcX protein 2, chloroplastic 4343652 Os07g0569600 2.2 3.0
 0.2
-0.1
 -0.1
-0.4
 0.4
0.3
 -1.4
 -0.2
-0.3
 1.0
-1.0
 1.5
0.2
 -0.1
-1.4
 -0.9
32 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 2.2 3.2
 0.4
 0.7
 0.5
 0.3
 1.9
 1.9
 1.8
0.4
33 LOC4326612 probable aldo-keto reductase 1 4326612 Os01g0618100 2.2 3.0
 0.3
-0.4
 0.8
0.5
 0.2
-1.2
-0.1
-0.3
 1.2
0.1
 1.4
-0.2
 -0.2
-0.2
 0.2
-0.8
34 LOC4325613 CBL-interacting protein kinase 12-like 4325613 OSNPB_010759400 2.2 2.8
 -0.0
-0.4
 3.0
1.4
 1.3
-0.2
 1.0
0.2
 1.8
1.1
 1.5
0.8
 2.1
 -0.3
-0.4
 1.3
1.2
35 LOC4345375 chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 4345375 OSNPB_080360100 2.2 2.8
 -0.0
 2.5
 0.5
 0.0
 1.7
 2.3
 1.8
 1.1
0.9
 1.4
36 LOC4331765 cyclic dof factor 1 4331765 Os03g0169600 2.2 3.1
 0.3
0.0
 1.0
0.2
 0.2
0.2
 -0.7
-1.1
 1.4
1.2
 1.3
1.2
 1.6
1.3
 0.5
-0.3
 1.0
0.2
37 LOC9268106 EID1-like F-box protein 3 9268106 Os05g0494600 2.2 3.1
 0.5
 0.5
 0.6
 -0.8

0.6
0.1

38 LOC4333857 uncharacterized LOC4333857 4333857 Os03g0706900 2.2 2.9
 -0.3
 0.3
 0.4
 -0.4
-1.2
 1.8
0.5
 1.6
0.4
 1.3
0.9
 1.2
-0.0
 -0.4
-1.3
39 LOC112939545 uncharacterized LOC112939545 112939545 2.2 3.0








40 LOC4339913 uncharacterized LOC4339913 4339913 Os06g0114400 2.1 2.7
 0.5
 0.7
 1.2





41 LOC4328182 protein LOW PSII ACCUMULATION 3, chloroplastic 4328182 Os02g0129300 2.1 2.8
 0.0
 -0.9
 0.5
 -0.3
 0.1
 0.3
 -0.5
 -0.9
 -0.4
42 LOC4343532 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 4343532 OSNPB_070548300 2.1 2.5
 -0.1
 0.6
 -0.7
 -0.5
 0.3
-0.0
 1.4
-0.5
 1.0
 0.2
0.1
 2.7
43 LOC107276186 protein LEO1 homolog 107276186 Os03g0756500 2.1 3.1
 1.5
0.4
 2.4
1.2
 1.2
0.8
 1.2
 3.0
2.3
 2.6
1.9
 2.9
 0.6
 3.2
3.0
44 LOC9266226 2,4-dichlorophenol 6-monooxygenase 9266226 Os01g0901700 2.1 2.7
 0.7
 -0.6
 0.7
 1.2
 -0.3
 0.5
 -0.9
 2.5
 0.0
45 LOC4343734 transcription termination factor MTERF9, chloroplastic 4343734 Os07g0583200 2.1 2.4
 -0.2
 0.6
 0.5
 -1.5
 -0.4
-0.6
 -0.1
-0.3
 -0.1
 0.6
 -0.2
46 LOC4340893 UPF0061 protein AZOSEA38000 4340893 Os06g0320700 2.1 2.7
 -0.9
 1.3
 -0.9
 -1.8
 -0.6
 -0.8
 1.7
-1.2
 -0.7
 2.4
47 LOC4347659 rhodanese-like domain-containing protein 14, chloroplastic 4347659 Os09g0530000 2.1 3.0
 -0.1
 -0.2
 0.3
 -0.5
 0.3
-0.2
 -0.2
-0.5
 0.5
 1.0
0.1
48 LOC4342296 plastid division protein PDV2 4342296 Os07g0123300 2.1 2.5
 1.0
 -0.1
 -0.0
 -1.2
 1.0
0.8
 1.4
1.2
 0.1
 1.2
0.1
 0.3
-0.3
49 LOC4336260 B-box zinc finger protein 24 4336260 Os04g0493000 2.1 2.5
 -0.2
-0.3
 -0.0
-0.2
 0.5
0.4
 -1.5
-1.6
 -0.1
-0.1
 1.0
0.3
 0.3
 -0.3
-0.4
 -1.4
-2.3
50 LOC4327732 protein ANTI-SILENCING 1 4327732 Os01g0610300 2.1 2.3
 1.1
 2.7
 0.1
 2.0
 3.9
-0.7
 2.6
-2.1
 1.8
0.2
 1.0
0.7
 1.8
0.5
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