Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4345611   chaperonin-like RBCX protein 1, chloroplastic 
 osa-r.5   4345611   chaperonin-like RBCX protein 1, chloroplastic 
 osa-m.8   4345611   chaperonin-like RBCX protein 1, chloroplastic 
 ath-u.4   RbcX1   Chaperonin-like RbcX protein 
 gma-u.4   100820127   chaperonin-like RbcX protein 
 gma-u.4   100803175   uncharacterized LOC100803175 
 sly-u.4   101245517   chaperonin-like RBCX protein 1, chloroplastic 
 ppo-u.4   7484541   chaperonin-like RBCX protein 1, chloroplastic 
 mtr-u.4   25486226   chaperonin-like RBCX protein 1, chloroplastic 

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Top 50 coexpressed genes to 4345611 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa730   Thiamine metabolism  2 22 3.01
 osa30   Pentose phosphate pathway  1 57 -
 osa3018   RNA degradation  2 112 -
 osa480   Glutathione metabolism  2 114 -
 osa1240   Biosynthesis of cofactors  3 248 -

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osa:LOC4345611 (chaperonin-like RBCX protein 1, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4345611
osa-r.5
for
4345611
osa-m.8
for
4345611
ath-u.4
for
RbcX1
gma-u.4
for
100820127
gma-u.4
for
100803175
sly-u.4
for
101245517
ppo-u.4
for
7484541
mtr-u.4
for
25486226
1 LOC4333719 phosphomethylpyrimidine synthase, chloroplastic 4333719 Os03g0679700 7.4 6.4
 8.3
 3.7
 2.8
1.5
 3.0
2.2
 1.8
 2.7
1.4
 1.2
2 LOC4332353 uncharacterized LOC4332353 4332353 Os03g0265900 6.6 6.2
 6.9
 1.2
 5.7
5.3
 5.9
5.6
 3.7
-0.5
 3.4
-0.2
 4.5
0.1
3 LOC4325791 calvin cycle protein CP12-1, chloroplastic 4325791 Os01g0303000 6.4 7.4
 5.4
 3.5
0.6
 1.9
0.9
 3.6
2.9
 3.4
1.3
 2.2
1.8
 3.0
2.0
4 LOC4327790 probable 2-carboxy-D-arabinitol-1-phosphatase 4327790 Os01g0237100 6.2 5.2
 7.3
1.1
0.5
 0.6
0.0
 0.6
 0.5
 0.7
5 LOC4343443 thiamine thiazole synthase 2, chloroplastic 4343443 Os07g0529600 6.0 4.9
 7.1
 1.8
 3.1
2.6
 3.7
3.4
 1.0
 2.3
1.5
 3.4
-0.2
6 LOC4337691 uncharacterized LOC4337691 4337691 Os05g0128100 5.9 5.2
 6.6
 1.1
 3.3
2.9
 3.8
3.5
1.6
 2.7
7 LOC4339778 RNA polymerase sigma factor sigC 4339778 Os05g0589200 5.8 4.6
 7.0
 1.6
 1.3
 1.6
 1.2
 0.7
 0.6
8 LOC4342192 photosynthetic NDH subunit of lumenal location 3, chloroplastic 4342192 Os07g0105600 5.7 5.4
 6.1
 2.6
 1.6
0.7
 1.5
0.3
 0.9
 0.1
 1.1
9 LOC4329586 ribonuclease J 4329586 Os02g0539600 5.7 4.0
 7.5
 2.7
 2.8
1.9
 3.2
1.4
 1.7
 1.3
1.0
 3.9
-0.1
10 LOC4348654 pentatricopeptide repeat-containing protein At4g31850, chloroplastic 4348654 Os10g0421800 5.6 3.5
 7.6
 0.9
 3.5
 3.4
 1.8
1.8
11 LOC4326442 light-regulated protein, chloroplastic-like 4326442 OSNPB_010102900 5.5 6.8
 4.2
 5.7
 4.9
3.7
 5.1
4.1
 1.6
 0.7
 4.0
12 LOC4341453 protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 4341453 Os06g0601000 5.4 3.2
 7.5
 -0.4
 2.0
1.2
 1.8
1.0
 0.7
 4.5
 0.8
13 LOC4328440 pentatricopeptide repeat-containing protein At2g35130 4328440 Os02g0170000 5.2 4.9
 5.6
 0.0
 2.6
 2.0
 2.2
 1.7
 3.5
14 LOC4350646 ATP-dependent DNA helicase At3g02060, chloroplastic 4350646 Os11g0533100 5.2 5.2
 5.2
 -0.4
 1.9
1.0
 2.5
1.9
 1.7
 0.8
0.7
 2.6
15 LOC4343262 photosynthetic NDH subunit of subcomplex B 3, chloroplastic 4343262 Os07g0489800 5.1 5.2
 5.0
 2.4
 1.0
0.8
 0.4
-0.1
 2.0
 0.9
 0.6
16 LOC4326994 CRS2-associated factor 2, chloroplastic 4326994 OSNPB_010323300 5.0 5.0
 5.1
 1.0
 1.7
 1.4
 1.9
 1.2
 1.7
17 LOC4333802 uncharacterized LOC4333802 4333802 Os03g0695500 5.0 4.7
 5.2
 2.0
 -0.0
 -0.5
 0.6
 1.0
 0.9
18 LOC4330883 uncharacterized LOC4330883 4330883 Os02g0773500 4.9 4.9
 4.9





19 LOC4333342 uncharacterized LOC4333342 4333342 Os03g0586500 4.9 4.7
 5.1
 6.9
 4.5
2.8
 3.7
2.9
 3.7
 4.0
 5.0
20 LOC4333513 protein OSB2, chloroplastic 4333513 Os03g0633900 4.9 4.0
 5.7
 -0.4
 0.7
-0.2
 0.5
0.5
 2.6
-0.1
 1.9
1.7
 -0.1
-0.8
21 LOC4338537 ferrochelatase-2, chloroplastic-like 4338537 OSNPB_050361200 4.8 4.1
 5.6
 1.2
 0.7
0.3
 0.6
0.5
 2.3
 0.8
0.8
 0.6
-0.2
22 LOC4334106 protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 4334106 Os03g0748300 4.8 4.6
 5.0
 1.6
 3.1
 2.8
 2.1
 3.7
 2.9
23 LOC4336846 UV-B-induced protein At3g17800, chloroplastic 4336846 Os04g0596300 4.8 3.7
 5.9
 0.6
 0.9
0.0
 0.5
-0.3
0.3
 1.3
24 LOC4342509 uncharacterized LOC4342509 4342509 Os07g0170200 4.8 3.5
 6.0
 2.0
 0.5
0.3
 0.7
-0.0
2.0
1.5
 1.4
25 LOC4345863 RNA-binding protein CP33, chloroplastic 4345863 Os08g0483200 4.7 4.2
 5.2
 0.8
 1.5
1.3
 0.4
0.3
 0.6
 0.9
 0.8
26 LOC4327073 B-box zinc finger protein 22 4327073 Os01g0202500 4.6 3.9
 5.4





27 LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic 4325906 Os01g0673800 4.6 3.7
 5.6
 3.7
 3.7
 4.1
 2.6
-0.1
 1.2
 4.3
28 LOC4347659 rhodanese-like domain-containing protein 14, chloroplastic 4347659 Os09g0530000 4.6 5.1
 4.0
 0.7
 1.1
0.8
 1.1
0.4
 1.8
 2.5
2.2
29 LOC4345779 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like 4345779 Os08g0463900 4.5 3.9
 5.1
 0.2
 0.4
 1.1
 2.0
 -0.1
 0.9
30 LOC4344632 multiple organellar RNA editing factor 9, chloroplastic 4344632 Os08g0139100 4.5 4.0
 4.9
 0.9
-0.5
 1.0
0.5
 0.4
0.1
 1.1
 1.0
1.0
 1.1
-0.5
31 LOC107279834 chaperonin 60 subunit beta 4, chloroplastic-like 107279834 4.5 6.2
1.9
-0.8
 2.8
2.7
 3.4
2.0
 2.4
0.8
 1.2
0.6
 1.0
0.4
32 LOC4329441 uncharacterized LOC4329441 4329441 Os02g0507400 4.5 4.0
 4.9
 0.5
 0.5
0.4
 1.1
1.0
 1.9
 2.1
1.3
 1.9
33 LOC4343652 chaperonin-like RbcX protein 2, chloroplastic 4343652 Os07g0569600 4.4 3.7
 5.1
 0.8
 1.1
-0.4
 0.7
0.7
 2.6
2.1
 0.6
-0.4
 -0.6
34 LOC4343987 cysteine-rich receptor-like protein kinase 6 4343987 Os07g0628900 4.4 4.6
 4.3
 0.5
0.5
 0.8
0.5
 1.6
0.8
 0.9
0.7
 0.7
0.3
 0.7
0.6
35 LOC4325154 aspartic proteinase-like 4325154 Os01g0290000 4.4 3.3
 5.5
 0.7
-0.6
 1.8
-0.1
 1.0
0.7
 0.7
0.7
 0.8
0.2
 3.1
-0.6
36 LOC107275738 chaperonin 60 subunit beta 4, chloroplastic 107275738 Os04g0443900 4.3 5.9
1.9
-0.8
 2.8
2.7
 3.4
2.0
 2.4
0.8
 1.2
0.6
 1.0
0.4
37 LOC9272302 uncharacterized LOC9272302 9272302 4.2 5.8






38 LOC4341038 phosphomannomutase/phosphoglucomutase 4341038 Os06g0476300 4.2 3.1
 5.4
 8.1
 1.9
 1.7
 2.0
 2.0
 0.4
39 LOC4333103 glucose-6-phosphate 1-dehydrogenase, chloroplastic 4333103 Os03g0412800 4.2 4.4
 4.0
 0.5
-0.3
 3.6
3.4
 4.0
3.2
 1.6
-0.2
 0.7
-0.4
 2.5
-0.4
40 LOC4346078 putative L-ascorbate peroxidase 6 4346078 Os08g0522400 4.2 4.4
 4.0
 0.5
 -0.6
 0.1
 1.5
 1.3
 1.0
41 LOC4338101 uncharacterized LOC4338101 4338101 Os05g0212400 4.2 4.4
 3.9
 -0.8
-0.9
 0.7
-0.3
 0.7
0.5
 0.5
-2.5
 -0.7
-1.1
 1.2
42 LOC4331333 phosphoglucan phosphatase DSP4, amyloplastic 4331333 Os03g0107800 4.1 3.2
 5.0
 2.0
 2.7
0.9
 2.2
0.4
 2.3
-0.3
 2.0
1.7
 3.8
43 LOC4352254 putative pumilio homolog 7, chloroplastic 4352254 Os12g0493900 4.1 4.1
 4.0
0.7
-0.3
 0.1
0.0
 0.5
-0.7
 0.1
-0.9
44 LOC9268627 carboxymethylenebutenolidase homolog 9268627 Os05g0429500 4.1 5.4
 2.7
 2.3
 1.9
 1.7
 1.2
 3.8
 2.4
45 LOC4338807 thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic 4338807 Os05g0417200 4.0 3.0
 5.0
 0.2
 0.6
 0.5
 1.4
 1.4
 0.7
46 PHT4;1 probable anion transporter 1, chloroplastic 4326905 OSNPB_010279700 4.0 4.4
 3.6
 0.6
-0.6
 1.8
1.4
 2.6
2.5
 1.8
0.4
 1.4
1.1
 1.4
-0.2
47 LOC4329067 CLP protease regulatory subunit CLPX1, mitochondrial 4329067 Os02g0293500 4.0 3.8
 4.2
 -0.1
 2.3
1.5
 1.8
1.8
 2.3
 1.1
0.3
 -0.8
48 LOC4325823 amino-acid permease BAT1 homolog 4325823 Os01g0945300 4.0 2.8
 5.2
 3.6
 0.7
0.6
 1.3
1.0
 0.1
 -0.1
-0.1
 -1.1
49 LOC4328182 protein LOW PSII ACCUMULATION 3, chloroplastic 4328182 Os02g0129300 3.9 3.8
 4.0
 1.4
 1.1
 0.3
 1.6
 2.0
 1.9
50 LOC4326612 probable aldo-keto reductase 1 4326612 Os01g0618100 3.9 2.5
 5.3
0.2
0.0
 1.7
-0.5
 0.5
0.1
 0.9
0.2
 0.5
0.4
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