Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4345872   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like 
 osa-r.5   4345872   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like 
 osa-m.8   4345872   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like 
 osa-u.4   4349410   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 osa-u.4   4343946   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like 
 osa-u.4   4333014   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like 
 ath-u.4   DHS2   3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 
 ath-u.4   DHS1   3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 
 ath-u.4   AT1G22410   Class-II DAHP synthetase family protein 
 gma-u.4   100797019   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 gma-u.4   100789764   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 sly-u.4   544153   phospho-2-dehydro-3-deoxyheptonate aldolase 
 sly-u.4   101247666   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 sly-u.4   544152   phospho-2-dehydro-3-deoxyheptonate aldolase 
 ppo-u.4   18094547   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 ppo-u.4   7461786   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 ppo-u.4   7468890   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 
 mtr-u.4   11418834   phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic 
 mtr-u.4   11427371   phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic 

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Top 50 coexpressed genes to 4345872 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  6 70 8.12
 osa1230   Biosynthesis of amino acids  4 219 2.94
 osa660   C5-Branched dibasic acid metabolism  2 7 4.04
 osa290   Valine, leucine and isoleucine biosynthesis  2 17 3.24
 osa250   Alanine, aspartate and glutamate metabolism  2 50 2.30

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osa:LOC4345872 (phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4345872
osa-r.5
for
4345872
osa-m.8
for
4345872
osa-u.4
for
4349410
osa-u.4
for
4343946
osa-u.4
for
4333014
ath-u.4
for
DHS2
ath-u.4
for
DHS1
ath-u.4
for
AT1G22410
gma-u.4
for
100797019
gma-u.4
for
100789764
sly-u.4
for
544153
sly-u.4
for
101247666
sly-u.4
for
544152
ppo-u.4
for
18094547
ppo-u.4
for
7461786
ppo-u.4
for
7468890
mtr-u.4
for
11418834
mtr-u.4
for
11427371
1 LOC4334103 YTH domain-containing family protein 2 4334103 Os03g0748000 4.1 4.7
 3.6
 0.5
0.2
 0.2
-0.3
 0.5
-1.1
 1.1
0.7
 0.5
0.4
 0.2
-0.6
 -0.2
-0.6
 3.1
2.8
 0.3
 -0.2
 2.4
 1.2
1.2
 -0.4
-0.4
 -0.1
-0.9
 0.6
 -0.4
2 LOC4346329 superoxide dismutase [Cu-Zn], chloroplastic-like 4346329 OSNPB_080561700 4.0 5.2
 2.8
 0.2
 2.2
 1.9
 0.8
 0.9
 0.5
 1.0
0.5
 0.0
-0.2


1.1
-0.3
 0.1
-0.2
 1.4
0.9
 3.1
 -0.6
3 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 4.0 4.6
 3.4
 0.3
0.1
 1.3
0.6
 -0.2
-0.3
 3.3
0.6
 1.3
-0.5
 1.1
0.1
 0.9
0.0
 2.1
1.9
 5.1
1.5
 1.8
1.4
 2.4
2.1
 1.7
1.0
 0.5
-0.7
 1.4
0.0
 3.7
2.8
 0.2
-0.8
4 LOC4344347 rhodanese-like/PpiC domain-containing protein 12, chloroplastic 4344347 Os07g0687500 4.0 3.3
 4.6
 -0.4
 1.0
 0.9
 2.0
 1.1
 1.2
 -0.1
 -0.1
 -1.2
 0.8
 -0.3
 2.5
 -0.3
 -1.2
 3.4
 -0.6
5 LOC4330852 soluble inorganic pyrophosphatase 6, chloroplastic 4330852 Os02g0768600 3.8 3.7
 3.9
 -0.3
 0.7
 0.2
 1.7
 2.9
 2.3
 0.7
-0.6
 4.0
2.5
 0.4
-1.1
 -0.3
-0.4
 2.6
2.5
 2.1
1.4
 1.1
0.8
 1.5
0.1
 1.6
 -0.6
6 LOC4351999 cysteine desulfurase 1, chloroplastic 4351999 Os12g0287300 3.7 3.9
 3.6
 0.9
 0.3
 0.4
 2.2
 1.4
 0.4
 0.4
-0.3
 1.9
1.5
 -0.8
 2.7
 0.7
 1.4
 -0.7
 -0.5
 3.8
 -0.6
7 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 3.6 4.8
 2.5
 0.2
0.0
 0.4
-0.2
 0.1
-0.1
 1.9
1.7
 1.4
1.0
 1.5
1.5
 1.5
1.3
 1.9
1.4
 0.7
0.1
 1.5
1.1
 2.0
1.9
 2.4
1.4
 0.7
0.0
 1.9
1.1
 5.0
4.5
 -0.2
-0.6
8 LOC4330908 isoleucine--tRNA ligase, chloroplastic/mitochondrial 4330908 Os02g0778200 3.6 4.1
 3.1
 -0.7
 1.3
 0.7
 1.0
 0.4
 1.1
 0.1
 1.3
 -1.6
 0.2
 1.1
 1.3
 -0.4
 -0.8
 3.3
 -0.7
9 LOC4331537 ankyrin repeat domain-containing protein, chloroplastic 4331537 Os03g0135600 3.6 2.7
 4.4
 0.2
 -0.5
 -1.2
 3.2
 0.1
 -0.7
 1.0
-0.6
 3.4
0.9
 -0.8
 0.7
 -1.2
 2.8
0.6
 0.7
-0.5
 -0.3
-0.9
 2.3
1.5
 -1.5
-1.7
10 LOC4351647 monothiol glutaredoxin-S12, chloroplastic-like 4351647 OSNPB_120175500 3.6 3.6
 3.5
 -0.4
 1.3
 1.1
 4.4
 0.3
 0.2
 0.6
-0.4
 1.1
0.9
 -1.2
 2.8
 1.7
 1.2
 0.5
 -0.5
 3.9
 0.4
11 LOC4334910 uncharacterized LOC4334910 4334910 Os04g0105700 3.5 3.0
 4.0
 -0.9
 -1.6
 -1.3
 0.5
 -1.5
 -1.0
 -0.8
 -0.9
 -0.6
 1.0
 0.9
 0.8
 -0.9
 -0.4
 3.4
 -2.2
12 wsl3 white stripe leaf3 4348823 Os10g0462800 3.5 3.7
 3.3
 -0.3
 -0.3
 -0.1
 3.4
 -0.5
 -0.2
 0.1
-0.5
 1.3
0.9
 -1.0
 0.8
 -1.0
 1.3
 0.6
 1.1
 3.0
 -2.0
13 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 3.5 2.6
 4.3
 0.2
 0.7
 -0.2
 2.6
 0.4
 0.6
 1.3
0.6
 0.9
0.8
 -0.7
 0.4
 -0.2
 1.2
 0.5
 1.2
 4.4
 1.7
14 LOC4352522 solute carrier family 40 member 2, chloroplastic-like 4352522 OSNPB_120562100 3.4 3.9
 3.0
 -0.5
-1.1
 -0.5
-1.4
 -0.3
-0.5
 2.1
 0.6
 0.0
 0.5
 -0.7
 -0.4
 0.2
 1.2
 1.7
 0.0
 0.7
 0.9
 -1.4
15 LOC4329349 riboflavin biosynthesis protein PYRR, chloroplastic 4329349 Os02g0473000 3.4 3.6
 3.2
 -0.6
 0.9
 1.4
 0.3
 -0.8
 -0.9
 0.9
0.2
 1.2
-0.8
 -1.6
 1.6
 -0.4
 2.0
 0.3
 -0.2
 2.9
 -0.8
16 LOC4330474 carbamoyl-phosphate synthase small chain, chloroplastic-like 4330474 OSNPB_020708100 3.4 4.6
 2.2
 0.6
 0.4
 0.3
 2.2
 1.1
 1.8
 1.3
0.9
 2.2
1.3
 0.9
 1.0
 0.6
 2.7
1.5
 -0.4
-1.9
 0.4
-1.4
 2.7
2.2
 0.8
-0.9
17 LOC4340394 20 kDa chaperonin, chloroplastic 4340394 Os06g0197575 3.4 4.9
0.5
-0.5
 0.2
0.0
 1.1
-0.1
 2.1
 0.1
 0.5
 1.1
0.9
 1.2
0.6
 0.7
0.4
 2.8
1.6
 2.4
1.6
 1.6
1.0
 0.6
-0.3
 0.4
-0.1
 3.7
3.1
 0.2
-1.4
18 LOC4330025 lysine--tRNA ligase, chloroplastic/mitochondrial 4330025 Os02g0623500 3.4 4.4
 2.3
 -0.4
 0.3
 0.6
 2.0
 0.6
 0.3
 -0.0
 0.9
 -1.6
 0.1
 -0.2
 1.2
 -0.2
 -0.5
 1.4
 -0.2
19 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 3.3 3.0
 3.7
 1.0
0.3
 0.1
-0.6
 0.2
-0.1
 3.4
2.3
 1.1
0.4
 0.5
0.4
 0.8
0.3
 0.6
0.5
 0.2
 1.1
 2.5
 1.8
1.5
 0.5
0.5
 0.8
0.8
 4.7
3.9
 0.1
-0.1
20 LOC4330192 3-isopropylmalate dehydratase small subunit 3 4330192 Os02g0655300 3.3 2.4
 4.3
 0.2
 1.7
 -0.1
 1.2
-0.4
 1.5
0.8
 1.5
0.3
 1.3
1.0
 -0.0
-0.1
 0.7
 1.6
 1.1
 1.1
 0.7
 1.6
 3.6
 2.1
21 LOC4330368 probable purine permease 11 4330368 Os02g0689200 3.3 3.4
 3.2
 0.9
-0.9
 0.8
-1.0
 0.1
-0.2
 -0.3
-0.7
 0.3
-0.8
 -0.8
-1.2
 1.2
1.0
 0.6
-0.4
 1.0
0.5
 1.0
0.6
 1.4
0.4
 -0.6
-1.1
 -0.3
-0.8
 -0.8
-0.9
 1.8
0.6
 2.6
0.9
22 LOC4342860 uncharacterized LOC4342860 4342860 Os07g0258000 3.3 4.1
 2.5















23 LOC4347448 protein Iojap, chloroplastic 4347448 Os09g0493600 3.3 2.8
 3.8
 0.0
 -0.6
 0.4
 0.5
 -0.1
 0.4
 -0.8
-1.1
 0.6
0.0
 -2.1
 1.1
 -0.2
 1.6
1.0
 -0.6
-1.2
 -0.5
-1.3
 3.8
 0.5
24 LOC4330071 ATP-dependent Clp protease proteolytic subunit 4330071 Os02g0634500 3.3 3.1
 3.5
 -0.2
 0.1
 -0.8












25 LOC4336987 lecithin-cholesterol acyltransferase-like 4 4336987 Os04g0615100 3.3 3.2
 3.3
 0.8
 -0.1
 0.5
 0.7
 0.0
 1.7
 -1.0
-1.1
 3.0
0.9
 1.0
 3.1
 3.0
 1.2
1.2
 1.8
-0.3
 0.9
-0.8
 0.6
 -1.2
26 LOC4342948 protein TIC 22-like, chloroplastic 4342948 Os07g0290800 3.2 2.8
 3.6
 -0.1
 -0.4
 -0.7
 0.7
 -0.4
 -0.6
 -0.6
-1.0
 0.9
-0.2
 0.3
 0.4
 0.1
 2.4
 -0.1
 0.3
 2.3
 1.3
27 LOC4346577 sufE-like protein 1, chloroplastic/mitochondrial 4346577 Os09g0270900 3.2 4.5
 1.9
 0.9
-0.1
 0.2
-0.7
 0.4
-0.6


1.0
 2.2
 -0.3
 0.3
 0.7
 0.7
0.3
 1.4
0.3
 1.2
-1.2
 4.2
 -1.2
28 LOC4336726 copper chaperone for superoxide dismutase, chloroplastic-like 4336726 OSNPB_040573200 3.2 4.5
 1.9
 -0.5
 2.0
 1.0
 1.4
 0.4
 -0.2
 0.2
 -0.4
 0.5
 2.0
 1.7
 1.3
0.9
 -0.3
-0.3
 1.5
0.6
 2.6
 -0.2
29 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 3.2 5.2
 1.2
 1.2
1.0
 0.7
-0.4
 0.7
0.1
 4.6
2.4
 1.7
0.2
 1.4
-0.5
 1.4
1.0
 2.9
2.3
 0.6
0.3
 4.2
-0.4
 2.4
0.3
 2.4
1.5
 1.4
1.4
 1.0
0.7
 4.6
3.6
 -0.5
-0.7
30 LOC4331942 30S ribosomal protein S10, chloroplastic 4331942 Os03g0196800 3.2 2.8
 3.5
 -0.3
 0.2
 -0.9












31 LOC4332596 argininosuccinate lyase, chloroplastic 4332596 Os03g0305500 3.2 2.6
 3.7
 -0.6
 2.2
 1.2
 1.3
 0.6
 1.4
 0.6
0.2
 0.3
-0.6
 0.9
 -2.1
 -0.4
 2.1
 -1.1
 0.2
 2.2
 0.8
32 LOC4346941 DEAD-box ATP-dependent RNA helicase 22-like 4346941 OSNPB_090383400 3.1 3.7
 2.6
 0.9
 -0.9
 -0.6
 0.3
 -0.6
 -0.1
 -1.6
 1.4
 0.2
 1.0
 -2.2
 0.9
 0.1
 0.9
 0.9
 -0.2
33 LOC4324505 aspartate--tRNA ligase, chloroplastic/mitochondrial 4324505 Os01g0153400 3.1 3.2
 3.1
 0.1
 -0.4
 0.1
 2.8
 0.7
 0.2
 -0.7
-1.1
 1.0
0.0
 -1.0
 1.1
 -2.2
 1.1
0.8
 0.1
-0.9
 -0.2
-0.7
 4.6
2.2
 -0.1
-0.2
34 LOC4324255 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 4324255 Os01g0705300 3.1 3.4
 2.8
 0.8
-0.5
 0.0
-0.6
 0.2
-0.6
 0.1
 0.0
 0.2
 -0.3
-0.6
 2.2
0.7
 -2.0
 1.6
 -0.3
 0.0
 0.8
 1.3
 1.7
 -1.2
35 LOC4352930 uncharacterized LOC4352930 4352930 Os12g0641300 3.1 3.2
 3.0
 -0.5
 0.3
 0.1
 0.9
 0.4
 1.5
 -1.7
 1.8
 -1.3
 2.2
 2.2
 1.0
 0.6
 0.4
 0.9
 -1.2
36 LOC4347821 cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 4347821 Os09g0556500 3.1 2.9
 3.3
 -1.3
 0.3
 1.0
 1.2
 1.9
 1.2
 -0.4
-1.1
 2.1
2.0
 -0.9
 0.4
 1.4
 1.7
 -0.3
 0.8
 2.7
 -2.1
37 LOC4345871 tRNA (cytosine(34)-C(5))-methyltransferase 4345871 Os08g0484400 3.1 2.5
 3.7
 -0.7
 -0.4
 0.2












38 LOC4347942 serine carboxypeptidase-like 2 4347942 Os10g0101200 3.1 1.8
 4.4
 -0.1
 1.6
 0.6












39 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 3.1 3.2
 3.0
 0.4
 -0.4
 -0.1
 2.7
 0.4
 0.3
 -0.3
-0.4
 0.8
0.8
 0.1
 1.1
 2.2
 0.7
 -0.1
 -0.3
 4.6
 -0.9
40 LOC4334524 probable protein phosphatase 2C 55 4334524 Os03g0809300 3.1 5.1
 1.0
 -0.2
 0.3
 0.3
 2.3
2.0
 1.2
-0.4
 0.2
-0.6
 1.5
-0.1
 3.0
2.4
 0.8
0.5
 0.6
0.5
 2.2
1.7
 2.5
1.4
 0.4
-0.0
 -0.2
-0.3
 4.5
3.1
 1.7
-1.0
41 LOC4342480 proline--tRNA ligase, chloroplastic/mitochondrial 4342480 Os07g0165000 3.1 3.4
 2.8
 0.1
 -0.9
 0.0
 2.6
 0.9
 1.3
 0.0
-0.2
 0.6
-1.4
 -0.6
 2.8
 0.9
 1.0
 -0.0
 -0.3
 3.3
 -0.0
42 LOC4337898 arginine--tRNA ligase, chloroplastic/mitochondrial 4337898 Os05g0163000 3.0 1.9
 4.1
 -0.7
-0.8
 1.6
0.1
 -0.1
-0.7
 1.1
-0.5
 1.1
0.7
 1.4
0.2
 0.2
0.1
 1.9
1.0
 0.7
 -1.2
 -0.7
 0.3
 -1.1
 -0.2
 3.1
0.8
 0.3
-0.4
43 LOC9271035 DNA topoisomerase 1 9271035 Os06g0281400 3.0 3.4
 2.7
 -0.1
-0.1
 0.7
0.1
 0.4
0.4
 0.3
 -0.3
 0.4
 -0.3
-0.4
 0.4
0.2
 -0.3
 -0.7
 -1.5
 0.9
 -0.6
 0.2
 1.1
 -0.3
44 LOC4324458 thioredoxin Y, chloroplastic-like 4324458 OSNPB_010963400 3.0 3.6
 2.5
 -0.8
 -0.2
 -0.4
 2.2
0.3
 -0.4
-1.5
 -0.2
-0.3
 0.6
-0.6
 3.4
1.5
 -0.9
 1.0
 -0.6
 1.4
1.1
 0.6
-0.7
 0.4
-0.8
 2.7
 0.9
45 LOC4351875 stromal 70 kDa heat shock-related protein, chloroplastic 4351875 Os12g0244100 3.0 3.5
 2.5
 0.2
-0.1
 2.1
1.2
 2.0
-0.5
 4.2
3.6
 1.9
0.9
 3.2
0.8
 2.0
1.6
 2.0
1.5
 0.5
-0.6
 1.2
0.6
 3.4
0.4
 2.0
1.9
 1.0
0.2
 0.9
-0.1
 5.0
 0.7
46 LOC4335917 uncharacterized LOC4335917 4335917 Os04g0438300 3.0 3.8
 2.2
 0.3
 -1.5
 -1.1
 2.4
 -0.8
 -1.6
 0.1
-1.5
 0.4
0.3


2.3
 0.2
 -0.6
 2.5
 -1.0
47 LOC4328147 3-isopropylmalate dehydratase large subunit, chloroplastic 4328147 Os02g0125100 3.0 3.7
 2.3
 1.0
 2.2
 0.4
 1.1
 2.1
 1.7
 0.5
0.3
 1.3
0.5
 0.6
-0.1
 -0.0
-0.2
 1.3
-0.6
 1.7
 -0.2
 -0.5
 4.8
-0.4
 1.9
0.8
48 LOC4340243 uncharacterized LOC4340243 4340243 Os06g0166200 3.0 3.2
 2.8
 0.2
 -0.4
 -0.6
 1.7
 -0.4
 -1.1




0.6
 1.1
 0.1
 4.0
 -0.6
49 LOC4334234 thioredoxin-like protein HCF164, chloroplastic 4334234 OSNPB_030767500 3.0 2.8
 3.1
 0.5
 -1.0
 -0.1
 0.2
 -0.5
 -0.2
 -1.1
 -0.0
 -1.4
 2.7
 0.6
 0.6
 -0.1
 0.3
 4.5
 -0.5
50 LOC4345328 bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic 4345328 Os08g0342400 3.0 2.6
 3.3















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