Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4346491   DNA-directed RNA polymerase 1B, mitochondrial 
 osa-r.5   4346491   DNA-directed RNA polymerase 1B, mitochondrial 
 osa-m.8   4346491   DNA-directed RNA polymerase 1B, mitochondrial 
 osa-u.4   4341695   DNA-directed RNA polymerase 3B, chloroplastic 
 ath-u.4   AT5G15700   DNA/RNA polymerases superfamily protein 
 ath-u.4   MGP3   male gametophyte defective 3 
 ath-u.4   SCA3   DNA/RNA polymerases superfamily protein 
 gma-u.4   100814762   DNA-directed RNA polymerase 1B, mitochondrial 
 gma-u.4   100781410   DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial 
 gma-u.4   100779299   DNA-directed RNA polymerase 3B, chloroplastic 
 sly-u.4   101255094   DNA-directed RNA polymerase 1, mitochondrial 
 sly-u.4   101248533   DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial 
 sly-u.4   101248495   DNA-directed RNA polymerase 3, chloroplastic 
 ppo-u.4   18107462   DNA-directed RNA polymerase 2, chloroplastic/mitochondrial 
 ppo-u.4   18097654   DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial 
 ppo-u.4   7489426   DNA-directed RNA polymerase 3, chloroplastic 
 mtr-u.4   11419494   DNA-directed RNA polymerase 1B, mitochondrial 
 mtr-u.4   11433844   DNA-directed RNA polymerase 2, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 4346491 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3008   Ribosome biogenesis in eukaryotes  6 86 7.58
 osa3020   RNA polymerase  3 52 3.74
 osa3013   Nucleocytoplasmic transport  3 109 2.80
 osa3030   DNA replication  2 40 2.49
 osa3018   RNA degradation  2 112 -

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osa:LOC4346491 (DNA-directed RNA polymerase 1B, mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4346491
osa-r.5
for
4346491
osa-m.8
for
4346491
osa-u.4
for
4341695
ath-u.4
for
AT5G15700
ath-u.4
for
MGP3
ath-u.4
for
SCA3
gma-u.4
for
100814762
gma-u.4
for
100781410
gma-u.4
for
100779299
sly-u.4
for
101255094
sly-u.4
for
101248533
sly-u.4
for
101248495
ppo-u.4
for
18107462
ppo-u.4
for
18097654
ppo-u.4
for
7489426
mtr-u.4
for
11419494
mtr-u.4
for
11433844
1 LOC4343142 tetratricopeptide repeat protein 27 homolog 4343142 Os07g0455100 8.0 8.5
 7.5
 4.0
 6.6
1.0
 6.1
0.9
 5.9
0.9
 7.7
6.5
 6.6
6.6
 5.5
4.9
 8.8
 7.1
 6.1
 0.4
 6.6
 3.3
 9.8
 8.0
2 LOC4351600 nucleolar protein 6 4351600 Os12g0166500 7.9 10.2
 5.6
 3.6
 8.1
 10.6
 6.5
 5.7
5.4
 6.7
5.8
 5.2
4.8
 7.6
 5.7
 5.3
 0.8
 3.8
 2.9
 9.0
 8.6
3 LOC9270399 DNA-directed RNA polymerase I subunit 1 9270399 Os06g0612200 7.0 10.0
3.2
 7.0
 10.3
 5.3
 9.4
 10.5
 4.8
 10.4
 6.9
 6.1
 1.2
 4.5
 3.3
 12.8
 10.2
4 LOC4339341 periodic tryptophan protein 2 4339341 Os05g0519500 7.0 4.5
 9.5
 2.6
 6.8
 7.0
 4.6
 6.9
6.1
 7.2
6.7
 5.3
4.7
 9.0
 5.6
 5.4
 1.0
0.9
 4.6
4.4
 3.4
1.8
 11.9
 7.5
5 LOC4334667 pumilio homolog 24 4334667 Os03g0831100 6.9 7.7
 6.1
 3.1
 7.8
 9.3
 3.5
 4.7
4.1
 5.7
4.6
 3.7
1.9
 7.3
 3.8
 4.0
 0.4
-0.3
 3.6
2.2
 2.4
1.5
 7.7
 6.2
6 LOC4343927 homeobox-DDT domain protein RLT3 4343927 Os07g0619600 6.9 8.9
 4.9
 3.7
 8.9
 7.7
 8.5
 5.4
5.0
 6.7
6.3
 6.6
6.6
 9.1
 7.4
 8.9
 1.4
1.2
 4.1
4.1
 5.0
5.0
 8.3
 8.9
7 LOC4325041 DNA repair protein recA homolog 3, mitochondrial 4325041 Os01g0901200 6.7 7.8
 5.6
 4.2
-0.3
 4.1
 4.0
 2.5
 1.7
0.1
 1.2
0.3
 0.6
0.4
 7.8
 3.2
 3.3
 1.5
0.3
 2.4
1.3
 2.5
1.7
 4.3
2.7
 3.5
1.0
8 LOC9270457 DNA-directed RNA polymerase I subunit 2 9270457 Os10g0495600 6.7 9.7
2.9
 8.9
 12.9
 5.9
 8.4
6.4
 8.5
4.8
 4.4
2.3
 10.9
 6.6
 6.2
 0.3
 3.5
 3.0
 13.6
 9.6
9 LOC9269589 uncharacterized LOC9269589 9269589 Os10g0154600 6.6 7.8
 5.4
 2.9
 2.5
 2.1
 1.7
 6.0
 6.6
 5.4
 5.1
 2.2
 2.6
 1.9
 2.3
 3.3
 3.9
 3.4
10 LOC4342673 rRNA biogenesis protein RRP5 4342673 Os07g0203300 6.6 8.0
 5.1
 3.5
 7.0
 8.6
 6.6
 9.4
8.8
 10.0
8.9
 6.3
6.1
 9.7
 7.6
 6.8
 1.3
 5.4
 3.6
 9.7
 7.8
11 LOC4326176 nuclear pore complex protein NUP85 4326176 Os01g0746200 6.6 7.0
 6.1
 3.4
 2.7
 2.0
 2.3
 6.1
 3.8
 2.3
 5.2
 3.2
 2.1
 1.2
 3.2
 2.6
 2.3
 2.3
12 LOC4331214 DEAD-box ATP-dependent RNA helicase 48-like 4331214 OSNPB_020826100 6.4 6.6
 6.2
 3.7
 8.6
 7.4
 4.9
 6.7
3.6
 5.4
2.4
 7.5
2.3
 8.9
 6.3
 4.6
 0.6
0.2
 5.4
3.9
 3.2
2.5
 7.5
 5.3
13 LOC4346646 uncharacterized LOC4346646 4346646 Os09g0296400 6.4 6.9
 5.9
 2.4
 5.3
 5.2
 4.5
 8.9
 6.6
 5.9
 0.9
 1.5
 1.8
 0.5
 4.2
 2.5
 7.5
 5.7
14 LOC4344789 DNA polymerase I A, chloroplastic-like 4344789 OSNPB_080175300 6.4 6.2
 6.6
 8.0
3.2
 6.7
3.8
 6.3
5.5
 7.9
6.7
 4.5
4.2
 5.1
3.3
 3.9
3.2
 3.3
 2.9
 4.8
 2.0
1.2
 3.0
2.4
 3.0
2.8
 4.3
4.2
 4.0
3.9
15 LOC4336577 uncharacterized protein At3g06530 4336577 Os04g0548300 6.3 7.1
 5.5
 2.9
 6.7
 8.4
 7.2
 10.3
8.7
 10.8
8.7
 7.3
5.8
 12.8
 8.0
 6.0
 1.0
 2.7
 3.0
 11.9
 9.4
16 LOC4337088 histone-lysine N-methyltransferase ATXR2 4337088 Os04g0629100 6.3 6.5
 6.1
 3.1
 1.1
 2.5
 0.8
 3.4
 2.8
 1.8
 2.9
 0.6
 0.3
 0.5
 0.9
 -0.4
 2.3
 2.9
17 LOC4351433 U3 small nucleolar ribonucleoprotein protein MPP10 4351433 Os12g0133900 6.2 5.6
 6.9
 4.5
1.9
 6.7
 8.0
 4.0
 6.0
3.9
 6.8
4.4
 5.3
3.5
 7.8
 4.2
 5.4
 3.7
1.5
 3.0
3.0
 3.3
1.4
 8.7
 8.4
18 LOC4342544 MMS19 nucleotide excision repair protein homolog 4342544 Os07g0177100 6.1 5.3
 6.9
 3.2
 4.5
 6.1
 1.8
 6.3
4.3
 9.3
5.3
 7.0
6.9
 5.8
 4.7
 6.0
 0.8
 3.1
 2.9
 9.0
0.7
 7.1
1.4
19 LOC4331982 uncharacterized LOC4331982 4331982 Os03g0203100 6.1 6.5
 5.7
 2.7
 9.3
 7.0
 5.2
 3.9
3.6
 4.8
4.5
 5.2
4.3
 9.2
 8.0
 5.5
 1.5
 4.0
 4.4
 8.8
 7.2
20 LOC4344938 GTP-binding protein ERG 4344938 Os08g0207600 6.1 7.4
 4.7
 3.7
 7.3
 7.3
 4.5
 5.9
 6.4
 3.9
 8.4
 5.6
 4.9
 1.5
 3.5
 2.8
 5.8
3.4
 3.9
2.6
21 LOC4333869 zinc finger protein VAR3, chloroplastic 4333869 Os03g0708900 6.1 6.3
 5.8
 3.5
 4.7
 4.6
 9.9
 5.0
3.1
 3.9
3.4
 7.3
3.8
 4.6
 3.5
 4.6
 2.3
 1.4
 3.2
 7.2
 8.3
22 LOC9272465 multisubstrate pseudouridine synthase 7 9272465 Os05g0509300 6.0 5.9
 6.1
 3.6
2.3
 4.8
 5.4
 3.4
 5.3
2.5
 3.7
2.8
 3.9
3.5
 4.9
 6.1
 4.1
 1.2
 2.3
 2.8
 3.3
 1.2
23 LOC4329995 polyribonucleotide nucleotidyltransferase 2, mitochondrial-like 4329995 OSNPB_020617700 5.9 6.4
 5.5
 2.3
 8.5
 7.0
 5.6
 4.2
 4.1
 3.7
 8.1
 7.1
 5.7
 0.3
 5.5
 2.6
 9.3
 5.9
24 LOC4352769 DEAD-box ATP-dependent RNA helicase 9-like 4352769 OSNPB_120611200 5.9 7.8
 3.9
 4.6
0.3
 6.0
5.5
 6.3
4.8
 3.1
2.9
 4.6
4.1
 5.9
4.8
 4.5
4.2
 5.1
1.7
 3.8
0.7
 3.8
2.9
 1.6
1.0
 3.5
2.9
 5.1
3.2
 6.9
6.8
 7.1
5.5
25 LOC112936074 FIP1[III]-like protein 112936074 5.8 8.3
3.3













26 LOC4332742 ribosome biogenesis protein bms1 4332742 Os03g0333100 5.8 6.2
 5.4
 1.8
 7.8
 11.0
 6.2
 6.9
6.5
 8.7
8.2
 4.3
3.2
 9.2
 5.7
 6.1
 0.7
 4.2
 2.4
 9.3
 10.1
27 LOC4326297 something about silencing protein 10 4326297 Os01g0104800 5.8 7.6
 3.9
 3.0
 6.5
 8.3
 4.8
 6.7
4.3
 6.2
4.0
 4.3
1.5
 4.2
2.6
 1.3
-0.2
 1.8
0.1
 1.1
 3.7
 2.0
 5.8
 5.1
28 LOC4345386 putative methyltransferase NSUN6 4345386 Os08g0365900 5.7 5.5
 5.9
 3.2
 3.9
 3.6
 4.5
 1.0
 1.4
 1.7
 2.7
 1.7
 1.8
 0.5
 0.3
 1.2
 3.3
 3.0
29 LOC4352003 coilin 4352003 Os12g0288801 5.7 7.3
 4.2
 2.6
 6.5
 6.6
 6.3
 5.0
4.8
 5.6
3.3
 4.5
3.5
 5.3
0.1
 4.6
1.6
 5.2
2.0
 2.0
1.3
 2.3
1.2
 2.5
1.3
 2.9
 2.8
30 LOC4336254 DNA-directed RNA polymerase III subunit 1 4336254 Os04g0492300 5.7 7.3
 4.2
 3.2
 4.4
 3.9
 3.5
 4.9
 5.2
 3.8
 5.9
 5.6
 4.8
 1.2
 2.7
 4.7
 5.5
3.5
 6.2
4.0
31 LOC4344057 probable protein arginine N-methyltransferase 3 4344057 OSNPB_070640000 5.7 5.4
 6.0
 1.9
 5.5
 6.4
 4.0
 5.1
4.1
 5.4
4.2
 4.9
4.5
 7.6
 4.1
 5.0
 0.2
 3.8
 2.3
 6.8
 5.9
32 LOC4348797 midasin 4348797 Os10g0456950 5.7 5.2
 6.1
 3.2
 7.1
 6.5
 4.8
 10.0
10.0
 11.5
8.7
 5.7
4.9
 9.3
 6.7
 5.5
 2.0
 4.5
 4.0
 6.6
 6.7
33 LOC107279412 small subunit processome component 20 homolog 107279412 Os01g0584800 5.6 7.6
2.9
 8.4
 9.7
 7.2
 7.1
 8.5
 4.0
 11.8
 7.3
 6.0
 1.7
 5.2
 3.3
 8.2
 8.0
34 LOC4331630 nephrocystin-3 4331630 Os03g0149400 5.6 5.2
 5.9
 2.4













35 LOC4348965 DNA ligase 1 4348965 Os10g0489200 5.5 5.7
 5.4
 4.0
 3.9
 4.0
 1.8
 2.7
1.6
 2.5
1.9
 2.4
0.6
 1.3
 2.2
 2.3
 2.2
 2.1
 2.0
 5.3
 3.6
36 LOC9270208 protein RRP6-like 2 9270208 Os10g0437200 5.5 6.6
 4.4
 5.0
2.3
 5.9
2.7
 6.4
2.2
 3.9
2.1
 5.6
4.4
 4.2
3.7
 2.4
1.8
 4.5
 1.3
 1.8
 1.7
1.4
 2.8
2.4
 2.3
2.1
 4.2
3.3
 3.8
3.2
37 LOC4343611 elongator complex protein 1 4343611 Os07g0563700 5.5 5.8
 5.1
 3.2
 2.8
 3.0
 2.7
 4.9
 4.8
 1.6
 7.9
 3.5
 3.2
 1.5
1.0
 3.9
3.6
 2.2
1.6
 6.4
 6.8
38 LOC4329835 DNA mismatch repair protein PMS1 4329835 Os02g0592300 5.4 5.6
 5.3
 3.6
 4.6
 5.0
 3.4
 3.1
2.0
 5.0
2.8
 3.3
1.5
 2.1
 2.4
 2.2
 0.5
 1.1
 0.9
 2.6
 2.1
39 LOC9266752 nuclear pore complex protein NUP160 9266752 Os02g0142500 5.4 7.8
2.1
 7.1
 7.6
 5.6
 5.9
5.0
 5.9
5.1
 6.3
5.8
 3.9
 5.3
 4.1
 2.2
 3.1
 3.2
 4.3
 4.6
40 LOC4333268 elongation factor G, mitochondrial-like 4333268 OSNPB_030565500 5.4 6.0
 4.8
 2.8
 7.1
4.9
 7.0
4.6
 4.3
3.8
 9.9
9.2
 8.0
6.7
 4.1
2.3
 6.5
 5.1
 4.0
 1.7
1.3
 3.8
1.6
 3.5
2.5
 5.8
 6.4
41 LOC4342624 tRNA ligase 1 4342624 Os07g0191700 5.4 5.7
 5.1
 4.5
 3.1
 1.2
 1.8
 2.4
 2.3
 1.5
 0.6
 1.9
 0.4
 1.6
 2.9
 2.4
 0.6
 0.5
42 LOC4324370 la-related protein 1A 4324370 Os01g0266000 5.4 6.9
 3.8
 2.6
 2.6
 3.7
 2.0
 3.2
2.9
 2.4
2.3
 3.4
2.8
 2.5
 2.4
 2.2
 1.9
1.2
 2.1
1.6
 1.5
0.6
 5.7
 7.0
43 LOC4339821 structural maintenance of chromosomes protein 5 4339821 Os05g0596600 5.4 5.1
 5.6
 3.7
 3.5
 3.2
 0.9
 2.1
 2.7
 1.8
 1.9
 1.6
 0.8
 2.9
 2.1
 1.6
 4.1
3.5
 2.5
2.3
44 LOC4343805 pentatricopeptide repeat-containing protein At4g21705, mitochondrial 4343805 Os07g0598500 5.4 5.0
 5.7
 1.8
 0.3
 -0.1
 1.5
 1.5
-0.8
 2.4
-0.4
 2.4
-0.2
 4.6
4.3
 3.8
2.5
 2.8
2.1
 1.8
0.6
 1.5
1.0
 0.8
0.4
 3.7
2.9
 3.0
2.5
45 LOC4330465 ATPase family AAA domain-containing protein 3C 4330465 Os02g0706500 5.3 4.9
 5.8
 2.1
 9.1
6.0
 7.7
5.3
 3.9
3.6
 5.9
4.6
 6.3
5.4
 5.5
3.8
 7.7
 4.1
 3.8
 0.4
 4.9
 2.8
 7.0
 5.2
46 LOC4325593 uncharacterized LOC4325593 4325593 Os01g0768700 5.3 5.2
 5.5
 5.0
 6.1
 6.2
 4.1
 3.6
3.0
 4.4
3.1
 4.6
4.5
 4.9
2.1
 4.4
3.9
 2.7
1.7
 2.3
1.8
 3.6
3.3
 3.7
2.5
 9.7
 6.1
47 LOC4352026 WD repeat-containing protein GTS1 4352026 Os12g0294100 5.3 7.0
 3.6
 1.9
 2.7
 3.5
 2.3
 2.4
2.3
 3.8
3.7
 2.3
1.9
 3.3
 3.0
 1.6
 1.4
-1.0
 3.3
1.7
 1.5
0.3
 2.4
 3.4
48 LOC4336098 uncharacterized LOC4336098 4336098 Os04g0466700 5.2 6.5
 4.0
 2.6
 3.2
 3.5
 1.9
 4.9
4.8
 4.8
4.7
 1.6
1.5
 5.9
 4.2
 4.3
 1.4
1.3
 4.1
3.3
 4.0
3.5
 5.3
 4.6
49 LOC4336229 pentatricopeptide repeat-containing protein At1g06710, mitochondrial 4336229 Os04g0488500 5.2 4.4
 6.1
 4.7
 7.5
 6.3
 6.1
 4.0
1.8
 4.3
1.2
 5.9
1.7
 2.6
 1.0
 1.6
 1.1
 4.6
 2.9
 6.6
 5.0
50 LOC4329297 uncharacterized LOC4329297 4329297 Os02g0461200 5.2 4.9
 5.6
 2.3


1.5
1.3
 2.4
0.6
 0.3
-0.3
 0.6
 1.4
 0.2
 1.1
 2.3
 2.3
 2.1
 2.6
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