Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4347096   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 osa-r.5   4347096   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 osa-m.8   4347096   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 ath-u.4   AT4G30825   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100804693   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 sly-u.4   101248791   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 ppo-u.4   7463649   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 
 mtr-u.4   11411682   pentatricopeptide repeat-containing protein At4g30825, chloroplastic 

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Top 50 coexpressed genes to 4347096 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3060   Protein export  2 49 2.32
 osa450   Selenocompound metabolism  1 19 -
 osa480   Glutathione metabolism  1 114 -
 osa564   Glycerophospholipid metabolism  1 120 -
 osa4141   Protein processing in endoplasmic reticulum  2 224 -

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osa:LOC4347096 (pentatricopeptide repeat-containing protein At4g30825, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4347096
osa-r.5
for
4347096
osa-m.8
for
4347096
ath-u.4
for
AT4G30825
gma-u.4
for
100804693
sly-u.4
for
101248791
ppo-u.4
for
7463649
mtr-u.4
for
11411682
1 LOC4343532 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 4343532 OSNPB_070548300 5.4 4.9
 6.0
 4.2
 5.8
5.3
 2.3
 5.6
3.2
 3.7
2 LOC4350519 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 4350519 Os11g0482400 5.4 6.6
 4.1
3.7
2.3
 4.0
 0.5
 1.3
3 LOC4324758 nucleobase-ascorbate transporter 12 4324758 Os01g0857500 5.1 5.3
 4.9
 1.2
 0.2
0.0
 2.1
 0.4
-0.5
 1.3
0.2
4 LOC4352522 solute carrier family 40 member 2, chloroplastic-like 4352522 OSNPB_120562100 5.0 4.8
 5.1
 2.2
 2.1
 2.9
 2.4
 2.6
5 LOC4336633 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic 4336633 Os04g0557000 4.7 4.0
 5.4




6 LOC4329542 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4329542 Os02g0529900 4.6 3.2
 6.1




7 LOC4332087 DEAD-box ATP-dependent RNA helicase 47B-like 4332087 OSNPB_030219700 4.5 6.1
 3.0
 3.7
 1.6
1.6
 3.4
 2.3
 1.1
8 LOC4333282 pentatricopeptide repeat-containing protein At1g09900 4333282 Os03g0569800 4.5 5.2
 3.8




9 LOC9269748 pentatricopeptide repeat-containing protein At4g18520, chloroplastic 9269748 Os03g0644200 4.4 4.9
 3.9
 4.5
 1.1
 1.3
 1.4
 3.5
10 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 4.4 4.4
 4.3
 3.9
 5.0
3.5
 4.4
 3.4
2.2
 2.7
11 LOC4338452 chaperone protein dnaJ A7A, chloroplastic-like 4338452 OSNPB_050334400 4.3 5.0
 3.5
 4.8
3.8
 2.9
2.8
 2.3
 3.2
2.1
 1.8
12 LOC4342518 pentatricopeptide repeat-containing protein At5g03800 4342518 Os07g0172800 4.2 5.7
4.8
 3.3
 4.2
 1.9
 2.9
13 LOC4327054 pentatricopeptide repeat-containing protein At1g09900 4327054 Os01g0783100 4.2 5.4
 3.0




14 LOC4346272 uncharacterized protein ycf39 4346272 Os08g0553800 4.2 3.8
 4.5
 1.3
 0.9
 -0.2
 2.0
1.6
 0.6
15 LOC4328539 DNA repair protein RAD50 4328539 Os02g0186400 4.2 5.7
 2.6
 2.8
 3.0
2.4
 3.1
 1.2
 2.1
16 LOC112936097 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like 112936097 4.1 5.6
5.3
 5.6
4.9
 5.1
 3.6
 3.9
17 LOC4344159 thioredoxin reductase NTRC-like 4344159 OSNPB_070657900 4.0 5.8
 2.3
 2.5
 4.0
3.8
 2.9
1.0
 2.7
 0.7
18 LOC4324367 epoxide hydrolase 1 4324367 Os01g0919700 3.9 4.2
 3.6
 1.5
 1.7
 2.1
 0.8
 0.5
19 LOC4345856 dicarboxylate transporter 2.1, chloroplastic 4345856 Os08g0481800 3.9 4.1
 3.6
 1.0
-0.8
 2.6
1.5
 1.7
0.6
 1.4
0.4
 1.8
20 LOC4345881 haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 4345881 Os08g0485900 3.8 3.7
 4.0
 0.6
 1.5
1.0
 0.8
 0.2
 1.1
21 LOC4346004 uncharacterized LOC4346004 4346004 Os08g0510800 3.8 3.3
 4.4
 0.2
 0.6
-0.3
 -1.1
 1.7
0.5
 1.4
22 LOC4348896 pentatricopeptide repeat-containing protein At1g08610 4348896 Os10g0476900 3.8 4.2
 3.4




23 LOC4348255 uncharacterized LOC4348255 4348255 Os10g0198600 3.8 3.7
 3.8
 3.8
 5.5
3.7
 3.3
 2.9
2.6
 2.1
24 LOC4335458 protein WHAT'S THIS FACTOR 1 4335458 Os04g0312100 3.7 3.4
 4.1
 3.1
 0.9
 1.6
 2.3
 3.0
25 LOC4331715 pentatricopeptide repeat-containing protein At3g23020 4331715 Os03g0163000 3.7 3.7
 3.8
 3.4
 3.8
3.4
 2.4
 2.2
 2.4
2.4
26 LOC4343774 pentatricopeptide repeat-containing protein At5g02860 4343774 Os07g0590600 3.7 4.9
3.0
 2.4
1.8
 2.3
 4.1
3.2
 4.0
27 LOC4334772 uncharacterized LOC4334772 4334772 3.7 3.9
 3.5




28 LOC4339664 protein WHAT'S THIS FACTOR 1 homolog 4339664 Os05g0571100 3.7 4.4
 3.0
 4.6
 3.0
0.7
 1.9
 2.8
2.2
 3.1
29 LOC4329941 outer envelope pore protein 37, chloroplastic 4329941 Os02g0608900 3.7 2.9
 4.4
 1.1
 5.1
 0.4
 0.5
-0.3
 2.2
30 LOC4351065 ADP,ATP carrier protein ER-ANT1 4351065 Os11g0661300 3.7 4.3
 3.0
 0.0
 2.4
2.0
 1.0
 1.2
 2.3
31 LOC4334100 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic 4334100 Os03g0747700 3.6 4.3
 2.9
 3.1
 2.1
0.2
 1.0
 0.7
 1.5
32 LOC4344777 clp protease adapter protein ClpF, chloroplastic 4344777 Os08g0172200 3.6 3.8
 3.5
 1.9
 2.4
2.1
 1.6
 2.1
 1.7
33 LOC4325633 uncharacterized protein YqeG 4325633 Os01g0796500 3.6 3.6
 3.7
 1.0
 2.9
 1.7
0.2
 1.5
1.3
 1.2
1.2
34 LOC4332759 pentatricopeptide repeat-containing protein At5g41170, mitochondrial 4332759 Os03g0336000 3.6 2.7
 4.5
0.8
 2.3
 1.4
 4.1
35 LOC4345097 preprotein translocase subunit SECY, chloroplastic-like 4345097 OSNPB_080254500 3.6 4.8
 2.4
 3.5
 4.1
 2.9
 2.3
1.4
 3.0
36 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 3.6 3.9
 3.3
 2.9
 2.1
1.4
 2.0
 3.7
3.1
 2.2
37 LOC4336891 pentatricopeptide repeat-containing protein At3g22150, chloroplastic 4336891 Os04g0602600 3.6 3.6
 3.6
 7.7
 4.9
 2.8
 3.2
 3.8
38 LOC4325508 pentatricopeptide repeat-containing protein At1g30610, chloroplastic 4325508 Os01g0674700 3.6 5.0
7.9
 2.6
 1.8
 4.5
 2.8
39 LOC4342622 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 4342622 Os07g0191500 3.6 2.6
 4.6
 5.4
 1.3
 2.1
 1.1
 1.8
40 LOC4331719 glutathione reductase, chloroplastic 4331719 Os03g0163300 3.6 4.5
 2.7
 1.1
 4.9
2.6
 2.5
 2.2
 2.0
41 LOC4338612 peptide chain release factor PrfB3, chloroplastic 4338612 Os05g0375600 3.6 5.2
3.0
 3.0
2.8
 1.7
 0.9
 1.6
42 LOC4342133 uncharacterized LOC4342133 4342133 Os06g0728500 3.5 2.9
 4.2




43 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 3.5 4.4
 2.7
 5.9
 5.9
5.4
 2.6
 4.4
 1.9
44 LOC9269022 clp protease adapter protein ClpF, chloroplastic 9269022 Os01g0764500 3.5 4.5
 2.5
 1.9
 2.4
2.1
 1.6
 2.1
 1.7
45 LOC4347913 probable anion transporter 4, chloroplastic 4347913 OSNPB_090570400 3.5 3.4
 3.6
 2.9
0.8
 3.7
3.2
 2.5
1.9
 2.5
2.1
 1.9
0.9
46 LOC4344191 tyrosine-specific transport protein 4344191 Os07g0662800 3.5 3.3
 3.7
 -0.9
2.6
 0.6
 0.4
47 LOC4349470 uncharacterized sugar kinase slr0537 4349470 Os10g0573000 3.5 3.1
 3.9
 5.2
 3.8
3.2
 3.4
 3.1
 1.9
48 LOC4351875 stromal 70 kDa heat shock-related protein, chloroplastic 4351875 Os12g0244100 3.5 4.0
 2.9
 3.8
1.4
 2.3
1.3
 3.4
-1.4
 1.6
1.4
 1.0
49 LOC4336230 uncharacterized protein ycf20 4336230 Os04g0488600 3.4 4.1
 2.8
 2.1
 1.2
 0.1
 1.9
 2.7
50 LOC4338678 probable transmembrane GTPase FZO-like, chloroplastic 4338678 Os05g0390100 3.4 5.2
 1.7
 3.3
 5.7
5.0
 3.1
 5.1
 2.6
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