Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4347821   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 
 osa-r.5   4347821   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 
 osa-m.8   4347821   cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like 
 ath-u.4   SYCO ARATH   Cysteinyl-tRNA synthetase, class Ia family protein 
 gma-u.4   100786700   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.4   100777971   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.4   101256769   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.4   7458385   cysteine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.4   11432999   cysteine--tRNA ligase, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 4347821 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  10 69 15.69
 osa860   Porphyrin metabolism  5 42 7.57
 osa1240   Biosynthesis of cofactors  5 233 3.89
 osa3018   RNA degradation  2 112 -
 osa3010   Ribosome  2 353 -

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osa:LOC4347821 (cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial-like) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4347821
osa-r.5
for
4347821
osa-m.8
for
4347821
ath-u.4
for
SYCO ARATH
gma-u.4
for
100786700
gma-u.4
for
100777971
sly-u.4
for
101256769
ppo-u.4
for
7458385
mtr-u.4
for
11432999
1 LOC4330025 lysine--tRNA ligase, chloroplastic/mitochondrial 4330025 Os02g0623500 8.0 6.4
 9.7
 8.0
 5.9
 3.5
 5.0
 5.2
 2.5
2 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 7.9 7.2
 8.6
 4.0
 4.8
4.0
 4.1
3.2
 3.9
 3.6
3.1
 3.1
3 LOC4343250 asparagine--tRNA ligase, chloroplastic/mitochondrial 4343250 Os07g0485400 7.9 6.5
 9.2
 5.3
 5.4
4.9
 3.7
3.3
 5.1
 3.7
2.1
 2.4
4 LOC9269534 ribosome-binding ATPase YchF 9269534 Os03g0781000 7.0 5.7
 8.2
 9.8
 4.2
 3.5
 4.7
 3.8
 2.8
5 LOC4334537 magnesium-chelatase subunit ChlD, chloroplastic-like 4334537 OSNPB_030811100 6.9 6.5
 7.2
 2.3
 3.0
2.4
 1.6
0.9
 4.5
 3.7
 3.9
6 LOC4332018 methionine--tRNA ligase, chloroplastic/mitochondrial 4332018 Os03g0209600 6.5 6.2
 6.8
 6.8
 5.7
4.6
 3.3
3.0
 3.8
 3.3
 2.2
7 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 6.4 6.3
 6.5
 4.1
 4.2
 4.3
 4.7
 4.0
 2.7
8 LOC4334877 rhodanese-like domain-containing protein 8, chloroplastic 4334877 Os03g0861700 6.4 4.8
 7.9
 3.9
 4.0
 4.0
 2.7
 2.1
 1.9
9 RA1 rice albino1 4339847 Os06g0103600 6.3 6.0
 6.5
 6.8
 3.8
 3.4
 4.3
 2.6
2.2
 2.5
10 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 6.1 5.3
 7.0
 6.1
 4.9
4.6
 4.4
2.5
 4.0
 4.3
 2.1
11 LOC4330908 isoleucine--tRNA ligase, chloroplastic/mitochondrial 4330908 Os02g0778200 6.1 5.7
 6.6
 7.4
 6.6
 4.0
 5.7
 3.2
 2.5
12 LOC4328432 porphobilinogen deaminase, chloroplastic-like 4328432 OSNPB_020168800 6.0 7.1
 4.9
 4.1
 4.0
2.7
 2.8
2.4
 3.6
 2.0
0.7
 2.8
13 LOC4328994 proteinaceous RNase P 1, chloroplastic/mitochondrial 4328994 Os02g0273800 6.0 7.0
 5.0
2.6
 3.1
 4.0
 0.4
 3.0
14 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 6.0 5.2
 6.8
 1.8
 4.9
4.2
 3.1
2.4
 3.9
 2.7
 1.9
15 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 6.0 5.8
 6.1
 5.3
 5.0
 1.6
 5.2
 4.0
 4.2
16 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 5.9 5.0
 6.9
 2.6
 3.9
 4.2
 4.9
2.9
 4.3
3.5
 2.1
17 LOC4330740 pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like 4330740 OSNPB_020750400 5.9 5.4
 6.4
 5.3
 5.4
1.0
 6.2
0.3
 3.6
 4.8
 3.9
18 LOC9267409 uncharacterized protein YnbB 9267409 Os04g0636300 5.8 5.0
 6.7
4.2
2.4
 3.9
3.1
 3.4
 4.5
 1.7
19 LOC4350686 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like 4350686 OSNPB_110544800 5.7 6.5
 5.0
 5.4
 4.0
3.4
 2.7
2.0
 5.3
 3.0
 4.7
20 wsl6 white stripe leaf6 9271571 OSNPB_050567300 5.7 5.7
 5.7
 7.5
 5.3
1.3
 4.4
1.1
 3.5
 4.3
 2.8
21 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 5.7 5.3
 6.1
 5.2
 4.2
2.9
 4.3
3.7
 4.3
 4.5
 3.8
22 LOC4332779 putative tRNA pseudouridine synthase 4332779 Os03g0338600 5.6 5.6
 5.6
 5.4
 3.6
2.9
 2.3
2.1
 1.1
 2.8
 1.3
-0.3
23 LOC4342480 proline--tRNA ligase, chloroplastic/mitochondrial 4342480 Os07g0165000 5.6 4.9
 6.3
 6.2
 5.6
5.6
 4.3
3.0
 5.1
 4.4
 3.1
24 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 5.5 5.1
 6.0
 6.1
2.0
 3.3
2.5
 2.2
1.0
 2.3
 3.0
2.1
 1.9
1.3
25 LOC4325242 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 4325242 Os01g0960300 5.5 5.8
 5.2
 4.7
 5.8
3.2
 4.7
3.0
 3.8
 3.2
 4.2
26 LOC4328118 glutamate--tRNA ligase, chloroplastic/mitochondrial 4328118 Os02g0121000 5.5 4.8
 6.2
 4.5
 6.3
3.7
 4.1
3.3
 4.2
 1.7
 4.3
27 LOC4342497 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 4342497 OSNPB_070168000 5.5 4.7
 6.2
 5.0
 3.3
 2.7
 3.1
 5.6
3.3
 1.3
28 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 5.4 3.8
 7.1
 2.7
1.1
 4.2
3.6
 2.7
2.4
 3.8
2.4
 3.6
0.8
 0.6
0.2
29 LOC4339890 pentatricopeptide repeat-containing protein At5g27270 4339890 Os06g0111300 5.4 6.7
 4.2
 1.3
 3.3
 2.7
 1.5
 1.3
1.1
 2.6
30 LOC4349608 elongation factor P 4349608 Os11g0116400 5.4 4.0
 6.7
 4.2
 4.1
3.6
 3.0
3.0
 4.4
 3.7
 1.2
31 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 5.4 4.5
 6.2
 7.1
5.7
 5.6
4.6
 3.7
3.2
 3.8
1.3
 3.4
3.3
 2.8
1.2
32 LOC4329349 riboflavin biosynthesis protein PYRR, chloroplastic 4329349 Os02g0473000 5.3 4.9
 5.7
 3.4
 3.2
2.8
 2.9
2.3
 2.0
 1.7
 2.3
33 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 5.3 4.1
 6.5
 4.5
 4.1
 2.9
 5.8
 2.1
 1.7
34 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 5.2 5.6
 4.8
 6.2
5.0
 5.1
4.4
 3.2
2.7
 6.0
3.2
 4.6
4.2
 3.7
2.7
35 LOC4336824 31 kDa ribonucleoprotein, chloroplastic 4336824 Os04g0591000 5.2 5.2
 5.3
 4.7
 3.1
1.5
 3.6
3.0
 2.5
 1.7
 1.3
36 LOC4335702 chaperone protein ClpC1, chloroplastic-like 4335702 OSNPB_040397100 5.2 5.7
 4.7
 2.0
0.2
 4.0
2.5
 2.4
1.3
 2.9
1.0
 2.7
1.9
 2.8
2.6
37 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 5.2 4.4
 5.9
 5.3
4.8
 4.3
4.2
 3.2
1.6
 4.7
 5.7
 2.4
38 LOC4327912 peptidyl-prolyl cis-trans isomerase A1 4327912 Os01g0284700 5.2 3.9
 6.5
 2.9
 2.9
2.8
 1.8
1.6
2.4
 1.5
-0.3
39 LOC4352408 phenylalanine--tRNA ligase, chloroplastic/mitochondrial 4352408 Os12g0533700 5.2 5.9
 4.4
 3.9
 6.2
2.8
 2.5
1.6
 4.6
 2.7
 3.9
40 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 5.1 5.5
 4.7
 6.3
 4.7
3.6
 3.6
2.9
 3.9
 4.2
 3.7
41 LOC4334509 calreticulin-2 4334509 5.1 7.0
 3.3





42 LOC4326635 uroporphyrinogen decarboxylase 1, chloroplastic-like 4326635 OSNPB_010622300 5.1 7.0
 3.3
 3.3
 6.5
4.8
 4.6
2.7
 5.0
 2.4
 3.0
43 LOC4327755 uncharacterized protein At4g37920 4327755 Os01g0306800 5.1 7.7
 2.5
 4.8
 4.3
4.1
 4.5
3.7
 2.1
 2.5
 3.5
44 LOC4327742 uncharacterized RNA methyltransferase pc1998 4327742 Os01g0920300 5.1 3.8
 6.4
 5.8
 3.3
 3.1
 4.6
 1.9
 1.1
45 LOC4342830 putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4873 4342830 Os07g0247100 5.1 4.9
 5.2
 1.8
 3.4
 3.4
 0.5
 2.3
46 LOC4345097 preprotein translocase subunit SECY, chloroplastic-like 4345097 OSNPB_080254500 5.1 5.1
 5.0
 1.9
 4.7
 2.6
 2.6
 2.3
2.1
 3.5
47 LOC4331652 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic 4331652 Os03g0152700 5.0 5.2
 4.9
 5.2
 5.0
 3.9
 3.2
 1.1
 3.5
48 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 5.0 4.6
 5.3
 3.7
 4.0
3.4
 3.6
2.9
 3.2
 2.7
2.0
 2.9
49 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 5.0 5.2
 4.8
2.4
 2.9
 0.8
 1.6
50 LOC4328965 chloroplast processing peptidase 4328965 Os02g0267000

4.7
 4.8
4.7
 2.6
2.4
 3.4
 4.1
2.4
 1.4
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