Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4348728   phosphoglycerate kinase 
 osa-r.5   4348728   phosphoglycerate kinase 
 osa-m.8   4348728   phosphoglycerate kinase 
 gma-u.4   100778356   phosphoglycerate kinase 
 sly-u.4   101264854   phosphoglycerate kinase, cytosolic 
 ppo-u.4   7467630   phosphoglycerate kinase 
 mtr-u.4   25495634   phosphoglycerate kinase 

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Top 50 coexpressed genes to 4348728 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  4 70 4.84
 osa3060   Protein export  2 49 2.32
 osa4145   Phagosome  2 82 -
 osa4141   Protein processing in endoplasmic reticulum  2 224 -
 osa3010   Ribosome  3 353 -

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osa:LOC4348728 (phosphoglycerate kinase) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4348728
osa-r.5
for
4348728
osa-m.8
for
4348728
gma-u.4
for
100778356
sly-u.4
for
101264854
ppo-u.4
for
7467630
mtr-u.4
for
25495634
1 LOC4351665 dynamin-like protein ARC5 4351665 5.7 5.3
 6.0
 3.0
 0.6
 3.7
 2.3
2 wsl3 white stripe leaf3 4348823 Os10g0462800 5.4 5.9
 4.9
 2.1
1.8
 0.9
 2.6
 3.0
3 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 5.4 5.7
 5.0
 1.4
 2.0
 3.5
 2.7
4 wsl white stripe leaf 4324682 Os01g0559500 5.3 4.7
 5.9
 2.1
 3.4
 3.3
2.4
 2.2
5 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 5.2 6.3
 4.1
 1.5
 0.6
 1.7
 2.5
6 LOC9267409 uncharacterized protein YnbB 9267409 Os04g0636300 5.2 4.5
 5.9
 3.2
3.0
 1.8
 2.1
 0.8
7 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 5.2 4.9
 5.6
 2.0
 1.8
 3.6
 3.3
8 LOC4338780 uncharacterized protein Cbei_0202 4338780 Os05g0411200 5.1 5.0
 5.3
 2.7
2.7
 0.2
 6.9
 1.7
9 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 5.1 5.1
 5.1
 3.3
2.8
 3.0
 4.8
 2.2
10 LOC4345097 preprotein translocase subunit SECY, chloroplastic-like 4345097 OSNPB_080254500 4.9 5.6
 4.3
 1.2
 1.0
 0.9
0.4
 2.3
11 LOC4344969 chloroplast envelope membrane protein 4344969 Os08g0224300 4.8 5.2
 4.3
 1.2
0.9
 1.8
 3.2
2.1
 1.9
12 LOC4343267 peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic 4343267 Os07g0490400 4.8 5.0
 4.6
 2.1
1.4
 1.6
 0.7
 1.8
13 LOC4341008 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic 4341008 Os06g0367100 4.7 4.5
 4.9
 1.5
 -0.4
 4.1
 1.4
14 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 4.7 5.0
 4.3
 2.3
2.1
 2.1
 1.3
 2.7
15 LOC4342081 RNA pseudouridine synthase 2, chloroplastic-like 4342081 OSNPB_060717400 4.5 3.6
 5.5
 1.9
 0.2
 1.0
 1.0
16 LOC4333747 uncharacterized tRNA/rRNA methyltransferase YsgA 4333747 Os03g0685100 4.5 3.9
 5.2
 1.7
 0.8
 1.7
 0.9
17 LOC4342480 proline--tRNA ligase, chloroplastic/mitochondrial 4342480 Os07g0165000 4.4 4.8
 4.1
 1.4
1.0
 0.7
 0.7
 2.7
18 LOC4334778 arginine decarboxylase 4334778 Os03g0848100 4.4 5.4
 3.5
 0.7
 0.9
0.4
 2.9
 3.0
0.9
19 LOC4330025 lysine--tRNA ligase, chloroplastic/mitochondrial 4330025 Os02g0623500 4.3 5.3
 3.3
 2.6
 0.9
 1.4
 0.9
20 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 4.3 4.9
 3.6
 1.1
1.0
 0.7
 1.2
 3.9
21 LOC4329341 pentatricopeptide repeat-containing protein At1g09900 4329341 Os02g0470000 4.3 4.8
 3.7



22 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 4.2 4.3
 4.2
 2.8
1.2
 0.8
 1.7
 2.5
23 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 4.2 4.8
 3.6
 2.6
1.5
 0.7
 1.7
1.6
 2.7
24 LOC4334509 calreticulin-2 4334509 4.2 4.8
 3.6



25 LOC4350988 GTPase Der 4350988 Os11g0638000 4.2 4.8
 3.5
 1.4
 2.7
 1.2
 2.4
26 LOC4332779 putative tRNA pseudouridine synthase 4332779 Os03g0338600 4.2 4.1
 4.2
 2.0
1.9
 2.0
 2.7
 1.5
1.3
27 LOC4334445 probable GTP-binding protein OBGC2 4334445 OSNPB_030799700 4.2 4.3
 4.0
 1.1
0.7
 -0.4
 2.3
 2.4
28 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 4.1 5.1
 3.2
 0.1
 -0.1
-0.5
 0.9
0.9
 1.9
29 LOC4327755 uncharacterized protein At4g37920 4327755 Os01g0306800 4.1 5.1
 3.2
 1.3
0.7
 0.2
 2.1
 2.9
30 LOC4327479 cysteine synthase-like 4327479 Os01g0814800 4.1 3.9
 4.4

1.4
 1.8
31 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 4.1 5.3
 2.8
 1.3
1.3
 1.0
 0.8
-0.4
 3.6
32 LOC4328994 proteinaceous RNase P 1, chloroplastic/mitochondrial 4328994 Os02g0273800 4.0 5.2
 2.8
 2.4
 0.5
 0.6
 2.5
33 LOC4346858 CRM-domain containing factor CFM3, chloroplastic/mitochondrial 4346858 Os09g0363100 4.0 4.9
 3.1
 2.9
 1.6
 2.8
 0.2
34 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 4.0 4.7
 3.2
 0.8
0.8
 0.3
 -0.5
 2.9
35 LOC4330458 probable pinoresinol-lariciresinol reductase 3 4330458 Os02g0705000 3.9 3.5
 4.4
-0.6
 0.5
36 LOC4335917 uncharacterized LOC4335917 4335917 Os04g0438300 3.9 4.4
 3.4
 1.1
0.2
-0.5
 1.3
37 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 3.9 4.1
 3.7
 1.0
-0.1
0.3
 3.4
38 LOC4334755 putative pentatricopeptide repeat-containing protein At3g01580 4334755 Os03g0844000 3.9 4.2
 3.6
-1.1

39 LOC4352538 psbP domain-containing protein 1, chloroplastic 4352538 Os12g0564400 3.9 4.4
 3.4
 1.2
 0.2
 0.7
-0.3
 2.6
40 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 3.9 3.7
 4.1
 0.3
 3.9
 3.1
41 LOC4324026 protein FLUORESCENT IN BLUE LIGHT, chloroplastic 4324026 Os01g0510600 3.9 4.7
 3.1
 1.0
1.0
 1.3
-0.8
 0.1
 2.5
42 LOC4342717 pentatricopeptide repeat-containing protein At2g41720 4342717 Os07g0213300 3.9 4.3
 3.4
 2.8
 2.0
 4.8
 0.8
43 LOC4343250 asparagine--tRNA ligase, chloroplastic/mitochondrial 4343250 Os07g0485400 3.9 3.7
 4.0
 1.8
1.1
 3.2
 3.2
2.1
 1.1
44 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 3.9 4.4
 3.3
 2.5
1.6
 0.9
 1.6
 3.1
45 LOC107275646 NLR family CARD domain-containing protein 3 107275646 Os06g0237502 3.8 5.0
1.1
0.7
 2.0
 2.5
 2.3
46 LOC4339342 protein DJ-1 homolog C 4339342 Os05g0519600 3.8 4.8
1.1
1.0
 2.8
 3.6
 1.6
47 LOC4339922 superoxide dismutase [Fe] 1, chloroplastic-like 4339922 OSNPB_060115400 3.8 4.3
 3.3
 2.5
1.7
 0.4
-1.2
 2.4
0.6
 0.5
48 LOC4344600 plant cysteine oxidase 3 4344600 Os08g0133000 3.8 2.4
 5.3
 1.4
1.3
 1.7
 3.0
1.0
 2.2
49 LOC4352799 transcription factor PCF8-like 4352799 OSNPB_120616400 3.8 3.8
 3.8



50 LOC4345871 tRNA (cytosine(34)-C(5))-methyltransferase 4345871 Os08g0484400 3.8 3.6
 4.0



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