Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4349063   pentatricopeptide repeat-containing protein At3g60050 
 osa-r.5   4349063   pentatricopeptide repeat-containing protein At3g60050 
 ath-u.4   AT3G60050   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.4   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.4   100805547   pentatricopeptide repeat-containing protein At3g60050 
 gma-u.4   100792512   pentatricopeptide repeat-containing protein At3g60050 
 sly-u.4   101255741   pentatricopeptide repeat-containing protein At3g60050-like 
 ppo-u.4   7454512   pentatricopeptide repeat-containing protein At1g55630 
 mtr-u.4   25496345   pentatricopeptide repeat-containing protein At3g60050 
 mtr-u.4   25485065   pentatricopeptide repeat-containing protein At1g55630 

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Top 50 coexpressed genes to 4349063 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa4122   Sulfur relay system  1 14 -
 osa3008   Ribosome biogenesis in eukaryotes  1 90 -
 osa970   Aminoacyl-tRNA biosynthesis  1 117 -
 osa4144   Endocytosis  1 163 -
 osa3010   Ribosome  1 353 -

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osa:LOC4349063 (pentatricopeptide repeat-containing protein At3g60050) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4349063
osa-r.5
for
4349063
ath-u.4
for
AT3G60050
ath-u.4
for
AT1G55630
gma-u.4
for
100805547
gma-u.4
for
100792512
sly-u.4
for
101255741
ppo-u.4
for
7454512
mtr-u.4
for
25496345
mtr-u.4
for
25485065
1 LOC4328419 pentatricopeptide repeat-containing protein At4g20770 4328419 Os02g0167200 3.9 5.4

2.0
 1.9
 0.1
1.0
 1.1
2 LOC4333574 GTPase LSG1-2 4333574 Os03g0647500 3.2 4.2
 2.2
-0.4
 1.4
0.3
 3.4
2.4
 1.8
0.9
 0.8
 0.9
 1.0
 0.9
3 LOC4350793 pentatricopeptide repeat-containing protein At4g14850 4350793 Os11g0583300 3.2 4.2
 1.6
 4.0
 0.5
 0.3
 -0.2
2.2
1.2
 2.1
1.9
4 LOC4341523 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial 4341523 3.1 4.2

1.9
 2.1

1.7
 1.1
5 LOC4338264 putative pentatricopeptide repeat-containing protein At1g10330 4338264 Os05g0271900 3.0 4.3
 5.0
 6.5
 1.7
 1.3
 0.6


6 LOC4343937 pentatricopeptide repeat-containing protein At4g28010 4343937 Os07g0621100 3.0 4.2







7 LOC9271701 pentatricopeptide repeat-containing protein At3g58590 9271701 Os01g0754700 2.8 4.0
 1.7
 2.1
 1.5
 1.2
 0.5
 1.5
 2.2
 1.0
8 LOC4350437 short integuments 2, mitochondrial 4350437 Os11g0447300 2.8 3.6
 0.6
 -0.3
 2.4
1.9
 1.3
0.9
 1.1
0.9
 0.2
 1.7
 0.7
9 LOC4325366 putative pentatricopeptide repeat-containing protein At5g52630 4325366 Os01g0651100 2.8 4.4
 2.2
 1.6
 2.0
 2.2
 0.2
 1.7
 3.1
 1.9
10 LOC4325438 pentatricopeptide repeat-containing protein At2g33680 4325438 Os01g0374200 2.8 3.9
 2.0
 1.9
 2.9
 2.2
 -0.7
 1.3
 2.2
 2.5
11 LOC4332065 pentatricopeptide repeat-containing protein At5g64320, mitochondrial 4332065 Os03g0216300 2.7 3.8







12 LOC4342744 KHG/KDPG aldolase 4342744 Os07g0222900 2.7 3.5

0.3
 -0.2
 -0.3
 0.3

13 LOC4339741 zinc finger BED domain-containing protein RICESLEEPER 3-like 4339741 OSNPB_050583200 2.6 3.6
 -1.2
 -0.4
 3.1
1.9
 3.6
2.6
 1.9
0.8
 2.5
0.9
 2.7
2.4
 2.1
2.0
14 LOC4348029 uncharacterized LOC4348029 4348029 Os10g0128800 2.6 3.7







15 LOC4346744 ras-related protein RABA1f 4346744 Os09g0327100 2.6 3.9
 0.7
0.2
 0.8
0.4
 0.8
0.7
 0.7
0.4
 1.7
0.4
 0.6
0.6
 0.4
0.0
 0.9
0.1
16 LOC4352470 pentatricopeptide repeat-containing protein 4352470 Os12g0552300 2.6 3.9
 2.8
 1.8
 3.9
2.2
 3.7
2.4
 2.0
 2.0
 1.5
 2.1
17 LOC4329654 pentatricopeptide repeat-containing protein At2g13600 4329654 Os02g0555100 2.6 3.6

2.2
 1.3

1.1
 1.6
18 LOC9267933 uncharacterized LOC9267933 9267933 Os11g0549610 2.6 3.8







19 LOC4331046 putative uncharacterized protein DDB_G0290521 4331046 Os02g0803200 2.6 3.6
 3.0
0.9
 1.4
-0.1
 1.8
 0.1
 1.2
 1.7
 3.2
 4.0
20 LOC4325580 pentatricopeptide repeat-containing protein At1g08070, chloroplastic 4325580 Os01g0715900 2.6 3.2







21 LOC4348935 uncharacterized LOC4348935 4348935 Os10g0484400 2.6 3.6
 -0.2
 0.1
 1.4
 0.6
 -0.5
 1.7
 1.1
 1.4
22 LOC9267207 pentatricopeptide repeat-containing protein At5g15010, mitochondrial 9267207 Os01g0816000 2.6 3.4
 6.7
 5.1
 1.4
 1.6
 2.7
 2.8
2.3
 1.5
 2.7
23 LOC4334044 telomerase Cajal body protein 1 4334044 Os03g0738000 2.5 3.4
 0.3
 1.2
 0.5
 0.5
 -0.2
 -0.5
 2.5
 1.4
24 LOC4348019 putative FBD-associated F-box protein At1g78730 4348019 Os10g0126600 2.5 3.5







25 LOC4350220 protein FAM136A 4350220 Os11g0256200 2.5 3.2
 1.4
0.9
 1.4
0.1
 2.1
1.6
 0.6
0.5
 0.7
-0.1
 0.8
 -0.2
 1.6
26 LOC4337950 F-box protein At5g07610 4337950 Os05g0172500 2.5 3.4
 2.2
 2.5

0.5
0.3
 1.2
0.7
 0.8
 0.4
27 LOC4337794 pentatricopeptide repeat-containing protein At4g35850, mitochondrial 4337794 Os05g0145600 2.5 3.3
 0.1
 -1.5
 2.3
1.2
 1.6
0.7
 1.4
 3.7
 1.2
 1.0
28 LOC4345875 uncharacterized LOC4345875 4345875 Os08g0484800 2.5 3.5
 -0.3
 1.4
 0.3
-0.3
 0.2
-0.7
 1.8
 2.7
0.7
 2.2
 1.8
29 LOC4349873 uncharacterized LOC4349873 4349873 Os11g0167300 2.5 3.0
 2.5
2.0
 0.5
-0.0
 3.3
3.0
 3.4
2.5
 2.2
 2.2
1.6
 2.8
 3.8
30 LOC4351284 putative pentatricopeptide repeat-containing protein At3g08820 4351284 Os12g0109300 2.5 3.2
 1.4
 1.6
 3.1
 2.5
 1.9
 2.3
1.7
 1.9
 2.5
31 LOC4339275 single-stranded DNA-binding protein, mitochondrial 4339275 Os05g0509700 2.5 2.9
 1.6
 1.2
 2.1
1.0
 1.7
0.5
 1.4
 0.6
 0.2
 2.2
32 LOC4338325 proline-, glutamic acid- and leucine-rich protein 1 4338325 Os05g0295900 2.5 2.9
 1.9
 1.4
 3.3
2.0
 3.0
2.8
 1.9
 0.7
 2.0
1.3
 3.2
1.7
33 LOC9270492 pentatricopeptide repeat-containing protein At5g56310 9270492 Os03g0169300 2.5 3.4

0.7
 0.3

2.5
 2.1
34 LOC4350759 F-box protein At5g06550 4350759 Os11g0572800 2.4 3.2
 3.2
 1.6
 3.1
1.7
 3.2
2.9
 2.5
 2.3
 3.6
 3.6
35 LOC4342999 transcription termination factor MTEF18, mitochondrial 4342999 Os07g0409400 2.4 2.8
 4.3
 5.0
 2.2
2.0
 3.8
2.1
 2.4
 3.1
 3.0
2.5
 2.0
1.5
36 LOC4330072 uncharacterized LOC4330072 4330072 Os02g0634600 2.4 3.0
 3.7
2.2
 3.5
2.7
 0.5
 1.9
 1.9
1.8
 1.4
1.1
 1.2
 1.1
37 LOC4352669 cytoplasmic tRNA 2-thiolation protein 2-like 4352669 OSNPB_120588900 2.4 3.0
 2.5
 2.1
 3.2
 2.9
 0.3
 1.3
 1.8
 1.7
38 LOC4350065 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 4350065 Os11g0213500 2.4 3.3

1.7
 1.1

1.1
 1.6
39 LOC4343842 pentatricopeptide repeat-containing protein PNM1, mitochondrial 4343842 Os07g0603900 2.4 3.0
 4.2
 2.6
 1.6
0.8
 1.2
0.8
 2.6
 0.7
 4.4
 3.1
40 LOC4350219 pentatricopeptide repeat-containing protein At3g12770 4350219 Os11g0256100 2.4 3.3



0.5


41 LOC4336241 ribosome-recycling factor 4336241 Os04g0490400 2.4 3.0
 -0.8
 -0.1
 2.8
 0.8
 1.7
 0.1
 0.2
 0.6
42 LOC4350926 uncharacterized LOC4350926 4350926 Os11g0616200 2.4 3.0
 1.5
 1.9
 0.5
 0.2
 0.9
 2.2
 0.3
 0.8
43 LOC4330585 tRNA (guanine(9)-N1)-methyltransferase 4330585 Os02g0725600 2.4 2.9
 2.5
 2.4
 1.7
1.4
 1.1
0.9
 1.4
 1.1
0.9
 3.2
 3.0
44 LOC4346171 glycine--tRNA ligase, mitochondrial 1 4346171 Os08g0538000 2.3 2.9
 -0.8
 -1.0
 1.7
 0.4
 0.9
-1.2
 1.2
0.7
 1.4
0.3
 1.9
1.1
45 LOC4340655 tRNA threonylcarbamoyladenosine dehydratase 4340655 Os06g0251000 2.3 2.9
 2.0
 2.2
 1.9
1.7
 1.6
1.4
 2.6
 0.9
 0.9
 0.8
46 LOC4329094 zinc finger MYM-type protein 1 4329094 Os02g0301400 2.3 2.7





0.5
 0.7
47 LOC4331630 nephrocystin-3 4331630 Os03g0149400 2.3 2.8







48 LOC4337565 uncharacterized LOC4337565 4337565 Os05g0106500 2.3 3.3
 2.6
 1.7
 1.1
0.7
 1.6
0.5
 2.8
 1.7
0.1
 0.2
 0.9
49 LOC4341056 uncharacterized LOC4341056 4341056 Os06g0482200 2.3 3.2
 -0.1
 -0.5
 1.0
 0.3
 2.3
-0.3
 -0.4
50 LOC4330009 pentatricopeptide repeat-containing protein At1g33350 4330009








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