Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4349417   beta-amylase 3, chloroplastic 
 osa-r.5   4349417   beta-amylase 3, chloroplastic 
 ath-u.4   CT-BMY   chloroplast beta-amylase 
 gma-u.4   100818063   beta-amylase 3, chloroplastic 
 gma-u.4   100784912   beta-amylase 3, chloroplastic 
 gma-u.4   BMY2   beta-amylase 
 sly-u.4   101259175   beta-amylase 3, chloroplastic-like 
 sly-u.4   101253815   beta-amylase 3, chloroplastic 
 ppo-u.4   18096911   beta-amylase 3, chloroplastic 
 mtr-u.4   25493571   beta-amylase 3, chloroplastic 
 mtr-u.4   11439428   beta-amylase 3, chloroplastic 
 mtr-u.4   11438460   beta-amylase 3, chloroplastic 

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Top 50 coexpressed genes to 4349417 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa280   Valine, leucine and isoleucine degradation  3 45 3.93
 osa640   Propanoate metabolism  2 29 2.77
 osa1250   Biosynthesis of nucleotide sugars  2 89 -
 osa520   Amino sugar and nucleotide sugar metabolism  2 162 -
 osa1240   Biosynthesis of cofactors  3 248 -

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osa:LOC4349417 (beta-amylase 3, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4349417
osa-r.5
for
4349417
ath-u.4
for
CT-BMY
gma-u.4
for
100818063
gma-u.4
for
100784912
gma-u.4
for
BMY2
sly-u.4
for
101259175
sly-u.4
for
101253815
ppo-u.4
for
18096911
mtr-u.4
for
25493571
mtr-u.4
for
11439428
mtr-u.4
for
11438460
1 LOC4330344 uncharacterized LOC4330344 4330344 Os02g0684400 5.2 7.4
 1.1
 3.0
3.0
 4.8
4.6
 5.0
4.9
 2.1
0.7
 6.0
5.2
 0.1
 6.0
5.7
 2.5
2.5
 -0.2
-0.9
2 LOC4331405 F-box protein PP2-A13 4331405 Os03g0116700 4.5 6.4
 2.6
2.1
 4.4
2.9
 4.1
2.7
 3.2
2.8
 1.8
1.1
 7.0
4.0
 0.8
0.4
 5.3
4.9
 3.0
1.2
 1.2
0.7
3 LOC4332844 inactive beta-amylase 9 4332844 Os03g0351300 4.5 6.3
 2.2
 4.3
3.9
 5.8
4.9
 7.0
6.4
 2.9
 5.5
 0.8
 6.4
 3.7
 -0.6
4 LOC4342824 guanosine deaminase 4342824 Os07g0245100 4.4 6.2
 0.5
 3.4
2.5
 3.5
3.1
 3.8
3.0
 -0.2
 2.6
 0.3
-0.6
 2.5
1.8
 0.5
-0.0
 -0.4
-0.9
5 LOC4327132 protein THYLAKOID RHODANESE-LIKE, chloroplastic-like 4327132 Os01g0175100 4.4 6.2
 1.2
-0.9
 2.1
1.9
 3.8
3.4
 3.8
3.3
 0.9
 5.2
 -0.8
-1.0
 5.2
 2.6
 -0.1
6 LOC4344321 thioredoxin-like 1-1, chloroplastic 4344321 OSNPB_070684100 4.2 6.2
 2.8
 3.2
3.0
 5.1
2.7
 6.1
2.6
 1.9
1.3
 3.7
0.4
 -0.2
-0.4
 6.2
 4.0
 -0.5
7 LOC4330349 protein REVEILLE 1 4330349 Os02g0685200 4.0 5.5









8 LOC9272566 cyclic dof factor 2 9272566 Os01g0264000 3.9 5.6
 1.8
1.6
 2.4
2.0
 2.3
1.5
 2.5
2.5
 4.6
4.1
 2.0
0.7
 1.3
1.2
 2.0
1.5
 0.4
0.2
 -0.2
-0.7
9 LOC4336779 uncharacterized LOC4336779 4336779 Os04g0583900 3.8 4.8









10 LOC4352812 uncharacterized LOC4352812 4352812 Os12g0618800 3.8 5.5
 0.5
0.3
 -0.5
-0.6
 0.7
0.4
 0.8
0.6
 2.2
0.4
 1.2
0.6
 0.6
-0.1
 2.7
1.3
 2.7
0.9
 0.6
-0.5
11 LOC4349385 transcription factor MYBS3-like 4349385 Os10g0561400 3.8 5.1
 -0.9
 1.6
0.4
 1.5
0.7
 1.6
0.2
 1.2
 3.4
 0.6
-0.1
 0.1
 -1.1
 -0.4
12 LOC4348829 uncharacterized LOC4348829 4348829 Os10g0463800 3.8 5.0
 0.4
 -0.6
 -0.1
 1.7
 -1.1
 0.5
 0.5
 2.6
 0.3
 -0.5
13 LOC4337962 uncharacterized LOC4337962 4337962 Os05g0176700 3.6 5.1
 1.2
-0.9
 2.1
1.9
 3.8
3.4
 3.8
3.3
 0.9
 5.2
 -0.8
-1.0
 5.2
 2.6
 -0.1
14 LOC9266830 U-box domain-containing protein 4 9266830 Os01g0112500 3.6 5.1
 -0.3
 2.5
1.3
 -0.4
-0.8
 3.2
2.2
 0.7
-0.1
 0.4
0.2
 0.7
0.5
 0.5
0.4
 1.2
0.5
 2.1
1.2
15 LOC9271699 uncharacterized LOC9271699 9271699 Os06g0661766 3.5 5.2









16 LOC4347474 uncharacterized LOC4347474 4347474 Os09g0499000 3.5 4.6
 -0.2
-0.8
 1.8
0.6
 3.4
2.4
 2.9
1.8

0.1
-0.1
 4.7
4.0
 2.9
1.8
 -0.8
-1.5
17 LOC4327248 uncharacterized LOC4327248 4327248 Os01g0923000 3.5 4.4









18 LOC4327931 ELF3-like protein 2 4327931 Os01g0566100 3.4 4.7
 1.3
 2.2
1.6
 2.4
1.7
 4.1
1.3
 0.2
-0.2
 4.5
1.7
 0.2
-0.2
 1.6
-0.8
 2.4
-0.6
 1.8
-1.0
19 LOC4330574 zinc finger protein CONSTANS-LIKE 9 4330574 Os02g0724000 3.4 4.1
 3.5
3.4
 2.0
1.0
 2.0
1.9
 3.9
3.5
 0.2
-0.3
 3.1
2.3
 0.7
0.0
 1.4
-0.5
 2.9
1.1
 6.1
0.9
20 LOC4324094 transcription factor KUA1 4324094 Os01g0603300 3.4 4.7
 0.7
 1.0
0.7
 1.2
0.4
 0.8
0.4
 1.3
1.3
 3.0
1.2
 0.7
 1.7
1.7
 2.0
1.4
 0.6
0.1
21 LOC4344650 transcription factor MYBS3-like 4344650 Os08g0144000 3.4 4.5









22 LOC4329347 probable protein phosphatase 2C 14 4329347 OSNPB_020471500 3.3 4.6









23 LOC4342598 probable D-2-hydroxyglutarate dehydrogenase, mitochondrial 4342598 OSNPB_070187200 3.2 4.5
 -1.2
 -0.6
 -1.3
 0.7
 -0.8
 0.4
 0.3
 -0.5
 -1.4
 -0.7
24 LOC4327364 F-box protein At4g18380 4327364 Os01g0812200 3.2 4.5









25 LOC4342076 chaperone protein dnaJ 11, chloroplastic 4342076 Os06g0716100 3.2 4.5
 -0.3
-0.5
 3.6
2.8
 5.8
4.2
 4.0
3.7
 0.6
0.4
 3.3
2.8
 0.6
0.1
 4.3
4.1
 3.7
1.1
 0.5
-0.2
26 LOC4338706 uncharacterized LOC4338706 4338706 Os05g0397300 3.2 4.6
 0.4
-1.1
 1.4
0.5
 2.6
2.6
 2.1
1.9
 0.3
 2.0
 1.2
 1.9
 0.6
 -0.1
27 LOC4330263 ganglioside-induced differentiation-associated protein 2 4330263 Os02g0668500 3.1 3.9
 0.1
 0.4
-0.1
 1.0
0.5
 0.5
-0.1
 1.8
0.2
 2.3
1.3
 0.2
-0.0
 2.8
 0.3
 -1.0
28 LOC4327304 zinc finger CCCH domain-containing protein 2-like 4327304 OSNPB_010192000 3.1 4.8
 -0.3
-0.3
 1.3
1.1
 2.0
1.1
 1.8
1.1
 0.4
0.2
 1.7
1.0
 -0.3
-0.5
 2.4
2.1
 0.9
0.9
 0.3
-0.2
29 LOC9269176 carboxyl-terminal-processing peptidase 2, chloroplastic 9269176 Os02g0815700 3.1 4.0
 0.0
 2.5
 0.8
 4.8
 1.9
 1.3
 0.0
 0.4
 -0.4
 -0.0
30 LOC4331917 inositol-3-phosphate synthase 1-like 4331917 OSNPB_030192700 3.1 4.4
 2.4
0.8
 2.7
2.1
 1.3
1.2
 2.3
1.8
 2.6
1.0
 -1.3
-1.5
 -0.1
-1.0
 0.1
-0.4
 0.6
-1.0
 1.1
-2.9
31 LOC4328781 mitochondrial carrier protein CoAc2 4328781 Os02g0226300 3.0 4.1
 -1.4
 2.1
 1.0
 3.5
 0.4
 2.1
 0.7
 -0.9
 -0.7
 -0.1
32 LOC4338477 protein EARLY RESPONSIVE TO DEHYDRATION 15 4338477 Os05g0344200 3.0 4.2









33 LOC4332223 acyl-CoA-binding domain-containing protein 5-like 4332223 Os03g0243600 3.0 4.1









34 LOC4346246 myb-related protein Zm38 4346246 3.0 4.2
 1.7
1.1
 0.6
0.2
 1.0
0.4
 0.8
0.8
 1.6
0.7
 3.5
1.4
 0.4
0.3
 0.4
0.1
 0.4
-0.0
 0.4
-0.0
35 LOC4344044 uncharacterized LOC4344044 4344044 Os07g0638100 3.0 3.9
 -0.8
 0.8
 2.6
 1.5
 0.7
0.2
 2.5
2.5
2.1
 0.9
 -0.2
36 LOC4329733 probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic 4329733 OSNPB_020572400 3.0 3.9
 1.7
 1.4
1.0
 0.7
-0.1
 2.3
1.3
 0.5
0.2
 3.8
1.0
 1.5
0.5
 0.5
-0.0
 0.4
-0.0
 1.3
-0.2
37 LOC4330048 uncharacterized LOC4330048 4330048 Os02g0629000 2.9 3.9
 0.4
-0.8
 1.3
1.1
 3.4
2.6
 2.6
2.0
 -0.1
-0.3
 2.6
2.4
 1.2
0.4
 2.9
2.5
 2.1
0.5
 0.4
-1.4
38 LOC4326767 2-oxoglutarate-Fe(II) type oxidoreductase hxnY 4326767 Os01g0188100 2.9 3.8
 0.4
-0.7
 2.4
1.6
 0.2
-0.0
 3.1
1.1
 -0.5
 -0.6
 0.9
0.0
 0.7
 0.1
 -0.6
39 LOC4341662 translation initiation factor IF-2 4341662 Os06g0646700 2.9 3.9









40 LOC4351684 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial 4351684 Os12g0183100 2.9 3.8
 0.0
-1.1
 2.3
2.3
 2.3
1.6
 2.7
2.5
 0.2
0.1
 1.1
-0.1
 0.6
0.3
 2.0
1.1
 0.5
-0.1
 -0.3
-1.5
41 LOC4332305 probable carboxylesterase 17 4332305 Os03g0258200 2.9 4.2
 0.6
0.5
 0.4
 0.3
 0.4
 0.2
 1.3
 0.5
-0.5
 0.9
 0.8
 1.0
42 LOC4349123 methionine gamma-lyase 4349123 Os10g0517500 2.8 4.1
 -1.1
 1.2
0.5
 1.4
0.3
 1.2
0.8
 0.3
0.2
 0.4
-0.7
 0.2
-0.0
 0.4
 0.7
 -0.2
43 LOC4331516 expansin-like A1 4331516 OSNPB_030132200 2.8 3.7
 1.2
0.8
 0.9
-0.3
 3.4
3.3
 1.4
0.0
 -0.2
 1.9
 1.1
0.8
 2.0
 0.5
 -0.2
44 LOC4324333 selenium-binding protein 1 4324333 Os01g0916400 2.8 3.8
 1.0
-0.6
 0.0
-0.2
 0.6
0.3
 2.3
0.3
 -0.0
 0.8
 -0.1
-0.1
 -0.6
 -1.6
 -0.7
45 LOC4350861 mannose-6-phosphate isomerase 1 4350861 Os11g0600900 2.8 4.0
 1.3
-0.4
 -0.1
-0.3
 1.3
0.6
 2.0
1.3
 1.0
-0.1
 1.8
1.3
 1.3
-0.1
 1.2
 1.0
 0.7
46 LOC4352741 methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like 4352741 OSNPB_120605800 2.8 3.7
 -0.3
 3.2
0.0
 3.1
0.9
 4.0
0.4
 0.6
 5.3
 0.2
 1.9
 -1.1
 -2.3
47 LOC4348636 GDP-mannose 3,5-epimerase 1-like 4348636 OSNPB_100417600 2.8 3.5
 3.1
 1.6
0.5
 0.4
0.3
 1.7
1.3
 3.8
2.9
 1.4
0.0
 -0.2
-0.4
 1.1
0.6
 1.0
0.9
 1.5
0.9
48 LOC4327289 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial 4327289 Os01g0314100 2.7 3.7
 -1.2
 3.2
-0.2
 3.5
0.2
 5.5
1.3
 -0.5
 2.1
 -0.7
 2.4
 -0.2
 -1.6
49 LOC4340812 zinc finger protein CONSTANS-LIKE 9 4340812 Os06g0298200 2.7 3.3
 3.5
3.4
 2.0
1.0
 2.0
1.9
 3.9
3.5
 0.2
-0.3
 3.1
2.3
 0.7
0.0
 1.4
-0.5
 2.9
1.1
 6.1
0.9
50 LOC4330971 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 4330971 Os02g0790500










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