Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4349500   probable inactive shikimate kinase like 2, chloroplastic 
 osa-r.5   4349500   probable inactive shikimate kinase like 2, chloroplastic 
 osa-m.8   4349500   probable inactive shikimate kinase like 2, chloroplastic 
 ath-u.4   SKL2   shikimate kinase like 2 
 gma-u.4   100816906   probable inactive shikimate kinase like 2, chloroplastic 
 sly-u.4   101258293   probable inactive shikimate kinase like 2, chloroplastic 
 ppo-u.4   7456094   probable inactive shikimate kinase like 2, chloroplastic 
 mtr-u.4   11434935   probable inactive shikimate kinase like 2, chloroplastic 

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Top 50 coexpressed genes to 4349500 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  16 336 17.24
 osa970   Aminoacyl-tRNA biosynthesis  2 70 2.02
 osa240   Pyrimidine metabolism  1 63 -
 osa561   Glycerolipid metabolism  1 84 -
 osa520   Amino sugar and nucleotide sugar metabolism  1 162 -

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osa:LOC4349500 (probable inactive shikimate kinase like 2, chloroplastic) External Links;


Show/Hide Columns:        
Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4349500
osa-r.5
for
4349500
osa-m.8
for
4349500
ath-u.4
for
SKL2
gma-u.4
for
100816906
sly-u.4
for
101258293
ppo-u.4
for
7456094
mtr-u.4
for
11434935
1 LOC4337588 uncharacterized protein At5g02240 4337588 Os05g0110300 6.5 6.1
 7.0
 8.9
1.9
 2.2
0.2
 3.0
 2.2
 0.5
-0.1
2 LOC4326439 probable inactive shikimate kinase like 1, chloroplastic 4326439 Os01g0102600 6.1 6.5
 5.7
 4.0
 6.9
6.1
 3.3
 3.7
 5.4
3 wgl2 white green leaf2 4334247 Os03g0769100 6.1 6.5
 5.6
 7.1
 6.3
5.2
 4.8
 4.4
2.2
 4.4
4 LOC4329578 2-Cys peroxiredoxin BAS1, chloroplastic-like 4329578 OSNPB_020537700 5.8 5.7
 5.8
 6.9
4.8
 6.0
4.9
 3.4
1.0
 4.0
3.0
 2.6
2.4
5 LOC4334555 50S ribosomal protein L17, chloroplastic 4334555 Os03g0815400 5.7 5.2
 6.2
 6.7
 6.3
5.8
 4.0
3.7
 3.2
2.5
 3.9
6 LOC4338498 chlorophyll synthase, chloroplastic-like 4338498 OSNPB_050349700 5.6 4.8
 6.4
 4.6
 5.3
4.1
 3.1
 4.1
-0.3
 1.9
7 LOC4328236 50S ribosomal protein L3, chloroplastic 4328236 Os02g0137200 5.6 5.9
 5.3
 6.1
 5.8
5.2
 5.7
 2.2
 3.4
8 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 5.5 4.7
 6.3
 1.8
 4.8
4.3
 3.9
 2.4
 3.0
9 LOC4324255 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 4324255 Os01g0705300 5.5 6.6
 4.3
 5.8
 5.8
3.7
 3.6
 2.7
 2.8
10 LOC4328586 peroxiredoxin-2E-2, chloroplastic-like 4328586 OSNPB_020192700 5.4 5.7
 5.1
 4.5
 4.6
 1.4
 2.5
 0.4
11 LOC4337526 50S ribosomal protein L28, chloroplastic 4337526 Os05g0101400 5.4 7.0
 3.9
 6.0
 5.2
 5.3
 4.4
 4.4
12 LOC4329197 fruit protein pKIWI502 4329197 Os02g0328300 5.3 4.4
 6.3
 3.0
 3.5
-1.1
 1.9
 4.3
0.5
 2.1
13 LOC4350683 GDT1-like protein 2, chloroplastic 4350683 OSNPB_110544500 5.3 5.3
 5.3
 0.9
 4.5
 3.6
 4.5
2.3
 2.3
14 LOC4332652 30S ribosomal protein S1, chloroplastic 4332652 Os03g0315800 5.3 4.9
 5.6
 8.3
 6.0
5.2
 2.3
0.1
 4.5
4.4
 3.9
15 LOC4333848 30S ribosomal protein S13, chloroplastic 4333848 Os03g0704000 5.2 5.4
 5.0
 6.3
 6.5
5.1
 4.7
 3.2
2.7
 4.5
16 LOC4327541 50S ribosomal protein L34, chloroplastic 4327541 Os01g0805000 5.2 6.3
 4.0
 5.3
 5.9
5.6
 2.9
 4.7
 3.2
17 LOC4342342 peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic 4342342 Os07g0133700 5.1 5.5
 4.6
 3.4
 4.4
 3.8
 2.1
 2.6
18 LOC4339115 serine/threonine-protein kinase STN8, chloroplastic 4339115 Os05g0480000 5.1 5.0
 5.2
 3.0
 2.5
2.2
 1.9
 1.4
0.9
 1.8
1.6
19 LOC4333233 30S ribosomal protein S5, chloroplastic 4333233 Os03g0452300 5.1 3.9
 6.2
 8.7
 8.0
5.7
 4.7
 4.1
 3.5
20 LOC4337177 glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like 4337177 5.1 5.1
 5.0
 7.5
 5.0
 3.6
 3.0
 3.6
21 LOC4350378 protein PEP-RELATED DEVELOPMENT ARRESTED 1 homolog, chloroplastic-like 4350378 Os11g0425300 5.0 4.7
 5.3
 5.3
 6.5
3.3
 2.4
 2.1
 3.5
22 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 5.0 6.0
 4.0
 2.5
 3.7
 3.2
 3.5
 3.8
23 LOC4338005 30S ribosomal protein S31, chloroplastic 4338005 Os05g0186000 5.0 4.0
 5.9
 5.3
 6.6
5.5
 3.1
 5.0
 3.0
24 LOC4352413 acyl carrier protein 1, chloroplastic 4352413 Os12g0534200 4.9 5.6
 4.3
 2.3
0.4
 1.7
1.5
 2.6
-2.1
 3.7
1.4
 2.5
-0.1
25 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 4.9 5.2
 4.6
 6.3
 7.4
5.0
 4.0
 4.2
 2.8
26 LOC4326312 glyoxylate/succinic semialdehyde reductase 2, chloroplastic 4326312 Os01g0574600 4.9 5.1
 4.7
 6.7
 8.9
 1.8
 2.3
 5.6
27 LOC4330320 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like 4330320 OSNPB_020680600 4.9 3.0
 6.7
 2.0
 2.1
 0.6
 1.9
1.8
 3.9
28 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 4.9 4.2
 5.5
 8.8
 6.7
6.2
 4.4
 2.7
 3.8
29 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 4.9 6.0
 3.7
 3.4
 6.5
5.1
 3.2
 4.7
 2.6
30 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 4.8 5.2
 4.4
 8.0
 8.1
 3.9
3.9
 3.6
2.9
 4.1
31 RA1 rice albino1 4339847 Os06g0103600 4.8 4.6
 5.0
 5.2
 5.6
 4.7
 1.9
1.0
 3.0
32 LOC4352705 renalase 4352705 Os12g0597400 4.8 3.6
 6.0
 4.9
 4.0
 3.5
 2.5
 2.8
33 LOC4327627 protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic-like 4327627 OSNPB_010798500 4.7 3.8
 5.5
 2.6
 5.5
4.3
 2.2
 2.6
 5.4
34 LOC4331442 50S ribosomal protein L11 4331442 Os03g0122200 4.7 4.3
 5.0
 8.6
 5.6
 5.3
 2.8
1.8
 3.0
35 LOC4326401 probable dual-specificity RNA methyltransferase RlmN 4326401 Os01g0973400 4.6 5.0
 4.2
 5.5
 5.2
4.7
 2.6
 2.0
 3.6
36 LOC4334445 probable GTP-binding protein OBGC2 4334445 OSNPB_030799700 4.6 4.3
 4.9
5.1
3.0
 4.9
 3.0
 3.9
37 LOC4337506 30S ribosomal protein S17, chloroplastic-like 4337506 Os04g0691600 4.6 4.7
 4.4
4.5
4.2
 4.2
 3.6
 5.3
38 LOC4338981 uracil phosphoribosyltransferase 4338981 Os05g0455700 4.5 3.8
 5.2
 6.2
 4.7
0.5
 2.7
 2.1
 0.1
39 LOC4337539 photosynthetic NDH subunit of lumenal location 5, chloroplastic 4337539 Os05g0103200 4.5 5.2
 3.8
 5.8
 5.8
4.1
 3.5
 4.0
2.6
 1.8
40 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 4.5 5.6
 3.3
 6.5
 5.9
5.8
 4.2
 3.2
 3.4
41 LOC4338660 UDP-sulfoquinovose synthase, chloroplastic 4338660 Os05g0387200 4.4 4.9
 3.9
 1.9
 5.0
4.1
 2.8
 2.7
 2.3
42 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 4.3 4.9
 3.7
 5.7
 7.4
 3.0
 2.9
 3.8
43 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 4.3 5.0
 3.7
 4.2
-0.3
 5.5
 3.0
2.2
 3.2
3.1
 5.0
44 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 4.3 4.2
 4.5
 5.9
2.0
 5.6
4.3
 1.8
0.6
 2.8
1.4
 2.3
1.8
45 LOC4334877 rhodanese-like domain-containing protein 8, chloroplastic 4334877 Os03g0861700 4.3 3.4
 5.2
 4.7
 7.3
 3.5
 1.2
 3.6
46 LOC4338460 uncharacterized LOC4338460 4338460 Os05g0337400 4.3 4.6
 4.0
 6.8
 7.2
7.1
 4.0
 6.7
 3.1
47 LOC4331249 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic 4331249 Os02g0831200 4.3 6.4
 2.2
 5.3
 5.7
 3.3
 2.6
 4.3
48 LOC4332466 50S ribosomal protein L10, chloroplastic 4332466 Os03g0284400 4.3 5.3
 3.4
 5.4
 4.7
 2.9
 3.5
1.3
 5.1
49 LOC4332089 50S ribosomal protein L15, chloroplastic 4332089 Os03g0219900 4.3 3.9
 4.6
 7.9
 6.4
 6.0
 4.7
0.3
 4.3
50 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 4.3 3.0
 5.6
 6.4
 8.5
4.6
 3.2
 3.5
2.4
 4.4
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