Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4349954   SWI/SNF complex subunit SWI3C 
 osa-r.5   4349954   SWI/SNF complex subunit SWI3C 
 osa-m.8   4349954   SWI/SNF complex subunit SWI3C 
 osa-u.4   9266524   SWI/SNF complex subunit SWI3C 
 ath-u.4   SWI3C   SWITCH/sucrose nonfermenting 3C 
 gma-u.4   732600   SWI/SNF complex subunit SWI3C 
 gma-u.4   100790286   SWI/SNF complex subunit SWI3C 
 gma-u.4   100780440   SWI/SNF complex subunit SWI3C 
 sly-u.4   SWI3C   SWI/SNF complex subunit SWI3C 
 ppo-u.4   18096212   SWI/SNF complex subunit SWI3C 
 ppo-u.4   7460970   SWI/SNF complex subunit SWI3C 
 mtr-u.4   11422202   SWI/SNF complex subunit SWI3C 

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Top 50 coexpressed genes to 4349954 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3018   RNA degradation  5 107 5.52
 osa3050   Proteasome  2 62 2.12
 osa310   Lysine degradation  1 36 -
 osa3015   mRNA surveillance pathway  1 115 -
 osa3040   Spliceosome  2 196 -

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osa:LOC4349954 (SWI/SNF complex subunit SWI3C) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4349954
osa-r.5
for
4349954
osa-m.8
for
4349954
osa-u.4
for
9266524
ath-u.4
for
SWI3C
gma-u.4
for
732600
gma-u.4
for
100790286
gma-u.4
for
100780440
sly-u.4
for
SWI3C
ppo-u.4
for
18096212
ppo-u.4
for
7460970
mtr-u.4
for
11422202
1 LOC4336647 mitogen-activated protein kinase kinase kinase YODA 4336647 Os04g0559800 5.5 4.9
 6.1
 2.4
1.6
 2.3
 1.7
1.3
 3.4
1.4
 1.4
1.1
 3.5
1.1
 3.5
3.1
 4.0
3.4
 2.5
-0.3
2 LOC4345535 uncharacterized LOC4345535 4345535 Os08g0407200 5.3 4.3
 6.2
 2.6
0.6
 2.1
 0.9
0.7
 1.1
0.9
 -0.0
-0.1
 0.9
-0.8
 0.7
0.6
 0.7
0.6
 2.1
-0.0
3 LOC4351271 uncharacterized LOC4351271 4351271 Os12g0106900 5.2 5.4
 5.0
 1.7







4 LOC4340450 uncharacterized LOC4340450 4340450 Os06g0209300 5.1 6.0
 4.2
 3.5
2.8
 4.0
 2.9
2.8
 0.3
0.0
 3.1
2.8
 2.1
 3.1
2.0
 1.7
1.3
 2.6
5 LOC4335638 SWI/SNF complex component SNF12 homolog 4335638 Os04g0382100 4.9 4.3
 5.5
 2.4
 3.6
1.3
 2.5
2.3
 1.4
1.1
 3.3
2.4
 0.4
-0.3
 1.9
1.3
 2.8
2.0
 5.0
3.1
6 LOC4341551 AT-rich interactive domain-containing protein 6 4341551 Os06g0622300 4.8 4.3
 5.4
 3.9
-0.2
 2.4
1.3
 3.2
2.0
 3.8
2.3
 3.9
3.8
 0.2
 5.4
2.9
 2.7
2.3
 1.3
-1.1
7 LOC4346363 RNA-binding protein 42 4346363 Os08g0567200 4.8 4.8
 4.8
 1.2
-0.1
 2.5
 2.2
1.5
 0.8
0.2
 1.4
-0.1
 0.9
0.7
 2.8
1.7
 1.1
0.6
 2.7
8 LOC4330479 histone-lysine N-methyltransferase SUVR5 4330479 Os02g0708600 4.7 3.7
 5.6
 4.2
 2.3
 2.4
0.9
 0.9
0.7
 1.3
1.1
 0.7
 2.8
1.6
 3.5
3.3
 1.3
9 LOC9269482 U-box domain-containing protein 44 9269482 Os12g0277400 4.6 5.2
 4.1
 1.9
 0.9
0.4
 -0.3
-0.6
 -1.5
-1.6
 -0.5
-1.0
 0.0
 0.2
-0.2
 1.0
-0.6
 4.1
10 LOC4328604 TBCC domain-containing protein 1 4328604 Os02g0194800 4.6 3.7
 5.6
 1.4
 4.8
2.2
 2.7
2.0
 2.0
0.3
 2.4
1.0
 0.1
 2.9
1.9
 1.2
-0.5
 3.5
2.9
11 LOC4336893 dual specificity protein kinase YAK1 homolog 4336893 Os04g0602800 4.6 3.9
 5.2
 1.4
1.1
 4.4
 4.2
3.6
 0.6
0.4
 2.7
2.2
 1.7
 2.1
1.9
 0.4
0.2
 2.2
12 LOC4344968 uncharacterized LOC4344968 4344968 Os08g0224200 4.6 4.3
 4.8
 1.3
0.3
 2.3
 1.6
0.7
 -0.4
-1.4
 -0.3
-2.1
 4.3
 2.7
1.5
 1.9
1.8
 4.0
13 LOC4326270 actin-related protein 6-like 4326270 OSNPB_010269900 4.6 2.3
 6.9
 2.0
 1.4
 3.4
 2.4
 4.8
 -1.1
 2.1
 0.9
 2.7
14 LOC4332022 pre-mRNA-processing factor 39 4332022 Os03g0210400 4.6 4.9
 4.2
 4.1
2.6
 5.2
4.2
 2.7
2.2
 1.2
0.8
 4.3
1.9
 3.6
2.6
 2.7
2.2
 2.6
1.3
 2.2
1.4
15 LOC4334388 BTB/POZ and MATH domain-containing protein 5 4334388 Os03g0792500 4.5 3.4
 5.6
 2.2
1.2
 3.3
2.8
 3.9
2.9
 1.8
0.2
 0.9
0.5
 0.6
-0.9
 3.3
1.6
 4.8
2.1
 2.1
2.0
16 LOC4348610 carbon catabolite repressor protein 4 homolog 1 4348610 Os10g0412100 4.5 3.8
 5.1
 2.2
2.0
 3.9
3.7
 2.4
0.4
 1.7
-0.4
 2.9
2.7
 -0.1
-1.8
 2.5
0.4
 1.5
0.9
 3.7
3.6
17 LOC4344611 zinc finger CCCH domain-containing protein 55-like 4344611 OSNPB_080135800 4.4 5.4
 3.4
 2.9







18 LOC4328009 protein transport protein SEC16B homolog 4328009 Os02g0105100 4.4 5.1
 3.7
 1.8
1.4
 4.0
2.0
 2.8
2.3
 0.2
0.2
 1.3
0.5
 1.7
1.3
 2.5
1.7
 0.7
-0.0
 3.8
2.3
19 LOC4348528 uncharacterized LOC4348528 4348528 Os10g0391100 4.4 4.9
 3.8
 2.0
 6.6
 3.8
3.5
 3.2
3.0
 5.1
2.5
 3.0
 4.6
4.4
 4.6
3.5
 3.4
20 LOC4335187 pentatricopeptide repeat-containing protein At5g16860 4335187 Os04g0218100 4.3 4.6
 4.1
 2.1
1.0
 0.1
 0.6
 0.8
 1.4
 0.5


21 LOC4347572 ATPase family AAA domain-containing protein At1g05910 4347572 Os09g0515100 4.3 3.9
 4.7
 4.0
 3.2
 1.1
0.4
 1.6
0.8
 3.9
1.6
 2.2
 3.5
3.1
 3.6
2.7
 2.6
22 LOC4340446 putative transcription elongation factor SPT5 homolog 1 4340446 Os06g0208300 4.3 4.3
 4.3
 1.4
 5.1
 2.9
1.5
 1.3
1.3
 4.1
2.5
 3.6
 2.4
1.2
 4.6
3.0
 3.5
23 LOC4344971 26S proteasome non-ATPase regulatory subunit 1 homolog A 4344971 Os08g0224700 4.3 4.3
 4.3
 1.4
1.0
 4.2
1.4
 1.3
-0.8
 0.4
0.0
 1.0
0.9
 0.8
-1.0
 1.3
0.6
 2.8
-0.1
 4.7
2.6
24 LOC4333866 DEAD-box ATP-dependent RNA helicase 21-like 4333866 OSNPB_030708600 4.3 3.4
 5.2
 3.4
 4.4
 1.7
1.2
 1.4
-0.8
 2.4
1.5
 4.3
-0.1
 1.6
0.9
 1.8
1.2
 4.0
25 LOC4333045 pre-mRNA-processing factor 17 4333045 Os03g0397500 4.2 4.7
 3.8
 1.8
 2.9
 2.1
0.8
 0.1
0.1
 2.1
1.8
 2.6
 2.8
-0.0
 2.7
1.0
 3.1
3.1
26 LOC4325002 ubinuclein-1 4325002 Os01g0883200 4.2 2.2
 6.3
 3.9
1.8
 5.0
3.0
 4.5
3.1
 1.0
0.7
 3.9
3.2
 2.6
 1.4
1.1
 2.4
2.1
 2.0
1.8
27 LOC4347996 probable helicase DDB_G0274399 4347996 Os10g0118900 4.2 3.0
 5.4
 0.4
 2.0
1.2
 3.0
2.5
 0.1
0.1
 0.9
0.7
 -0.4
 2.6
1.2
 2.2
1.5
 2.9
28 LOC4344819 histone-lysine N-methyltransferase ATXR3 4344819 Os08g0180100 4.2 4.0
 4.3
 3.7
 3.6
 3.1
2.5
 0.6
0.5
 2.1
1.6
 1.5
 1.9
1.7
 1.8
1.5
 3.6
2.1
29 LOC9270146 serine/arginine repetitive matrix protein 5 9270146 Os01g0367300 4.1 3.3
 4.9
 2.6







30 LOC4335478 FACT complex subunit SPT16-like 4335478 OSNPB_040321600 4.1 5.0
 3.2
 3.4
 5.2
 1.8
1.7
 2.1
1.9
 2.8
2.5
 3.9
1.3
 2.7
1.5
 4.3
3.0
 4.0
3.5
31 LOC4333598 general negative regulator of transcription subunit 3 4333598 Os03g0652100 4.1 6.9
 1.3
 1.7
 5.3
 1.8
1.5
 3.0
2.2
 1.3
0.9
 -1.2
 0.7
0.5
 2.3
1.7
 1.9
32 LOC4347878 polyadenylation and cleavage factor homolog 4 4347878 Os09g0566100 4.1 4.6
 3.6
 3.3
 4.9
 3.5
2.6
 1.7
0.8
 2.7
2.2
 2.6
0.6
 2.8
 3.1
 4.3
3.2
33 LOC4339638 uncharacterized LOC4339638 4339638 Os05g0566900 4.1 5.1
 3.0
 1.8
1.5
 5.4
5.3
 4.3
2.9
 1.4
0.9
 4.2
3.6
 4.8
2.5
 3.1
2.2
 3.7
2.4
 4.7
34 LOC4346613 SURP and G-patch domain-containing protein 1-like protein 4346613 Os09g0281600 4.1 4.5
 3.6
 4.0
 3.4
 0.7
-0.5
 1.9
1.8
 2.0
1.0
 2.9
 0.2
-0.1
 1.6
-0.3
 4.9
2.3
35 LOC4337419 clathrin light chain 1-like 4337419 OSNPB_040679100 4.0 3.9
 4.2
 1.1
-0.2
 3.6
1.5
 1.1
0.1
 1.2
0.7
 1.8
1.5
 1.4
-0.7
 2.3
1.3
 1.7
-0.2
 3.3
2.1
36 LOC9267191 homeobox protein LUMINIDEPENDENS 9267191 Os01g0934300 4.0 4.2
 3.9
 2.8
 8.8
 2.2
1.4
 1.9
0.1
 3.2
2.4
 3.3
2.0
 5.8
4.4
 3.2
2.5
 2.0
37 LOC4347735 probable 26S proteasome non-ATPase regulatory subunit 3 4347735 Os09g0541900 4.0 4.0
 4.1
 0.6
0.1
 3.3
1.6
 1.6
0.5
 2.0
0.6
 0.5
0.3
 0.4
 -0.6
-0.8
 1.5
-0.7
 2.3
2.0
38 LOC4347892 R3H domain-containing protein 1 4347892 Os09g0568000 4.0 2.9
 5.1
 2.4
3.8
3.4
 1.4
0.2
 3.4
2.5
 0.3
 2.9
1.4
 2.7
2.3
 6.3
3.6
39 LOC4346659 flowering time control protein FPA 4346659 Os09g0298700 4.0 3.2
 4.8
 1.9
 4.6
 3.7
3.0
 1.7
0.7
 2.8
2.1
 4.9
 0.5
 2.5
 1.0
40 LOC4331653 uncharacterized LOC4331653 4331653 Os03g0152800 4.0 4.7
 3.2
 1.2
 3.5
 1.0
0.1
 1.3
1.0
 1.9
1.0
 2.3
 0.8
 3.3
 3.6
0.8
41 LOC4346207 uncharacterized LOC4346207 4346207 Os08g0543600 4.0 4.8
 3.2
 3.0
 4.6
 4.5
2.9
 2.8
1.1
 3.5
2.5
 4.7
 2.9
1.6
 1.9
1.0
 4.7
42 LOC4343221 uncharacterized LOC4343221 4343221 Os07g0477500 4.0 5.5
 2.4
 2.5
 7.1
 1.9
1.1
 4.7
2.5
 4.2
3.0
 1.0
 2.6
2.2
 2.6
2.5
 4.3
1.6
43 LOC4326075 DExH-box ATP-dependent RNA helicase DExH3 4326075 Os01g0118100 3.9 4.7
 3.1
 2.2
 1.1
-0.4
 1.1
0.9
 1.8
1.1
 3.4
3.0
 0.6
-0.6
 2.9
2.2
 3.6
0.3
 2.1
1.8
44 LOC4345460 golgin candidate 4 4345460 Os08g0386900 3.9 3.6
 4.2
 1.6
 3.3
1.8
 2.3
1.0
 1.9
1.2
 1.4
1.3
 -0.5
 2.2
1.5
 1.4
-0.2
 1.5
1.2
45 LOC4346429 flowering time control protein FCA 4346429 Os09g0123200 3.9 4.3
 3.6
 3.3
 3.0
 4.0
2.7
 2.1
1.2
 5.5
3.4
 1.9
 5.3
 5.5
 4.3
46 LOC4341068 serine/threonine-protein kinase fray2 4341068 Os06g0486400 3.9 4.1
 3.7
 0.6
 3.6
 2.7
1.2
 1.2
0.8
 2.5
1.3
 -0.6
 0.5
 0.2
 2.2
47 LOC4334819 transcriptional repressor ILP1 4334819 Os03g0853700 3.9 4.0
 3.8
 2.5
 4.1
 2.6
2.2
 2.7
-0.2
 1.6
1.4
 5.3
 3.7
 3.9
 4.4
48 LOC4346428 CCR4-NOT transcription complex subunit 10 4346428 Os09g0123100 3.9 4.0
 3.8
 2.9
 2.8
 2.9
1.7
 1.4
0.1
 1.9
1.3
 2.0
 2.1
1.2
 2.5
1.7
 5.8
49 LOC4336501 DEAD-box ATP-dependent RNA helicase 6-like 4336501 OSNPB_040533000 3.9 3.6
 4.1
 2.1
1.8
 3.0
2.2
 2.4
2.4
 0.6
0.6
 2.0
1.2
 0.2
0.1
 1.9
1.7
 1.1
0.8
 4.1
3.4
50 LOC4336311 uncharacterized LOC4336311 4336311 Os04g0501600 3.8 5.4
 2.3
 5.7
1.2
 6.7
4.6
 3.3
2.1
 2.6
0.7
 3.1
2.5
 3.0
1.0
 2.8
1.6
 2.2
1.9
 3.6
3.3
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