Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4350404   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 osa-r.5   4350404   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 osa-m.8   4350404   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 osa-u.4   4339430   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 gma-u.4   100811113   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 gma-u.4   100778705   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 sly-u.4   101257545   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 ppo-u.4   7464269   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 mtr-u.4   25485649   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 
 mtr-u.4   11414344   pentatricopeptide repeat-containing protein At3g49240, mitochondrial 

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Top 50 coexpressed genes to 4350404 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3008   Ribosome biogenesis in eukaryotes  5 86 5.99
 osa3020   RNA polymerase  2 52 2.27
 osa240   Pyrimidine metabolism  2 62 2.12
 osa3040   Spliceosome  2 196 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4350404 (pentatricopeptide repeat-containing protein At3g49240, mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4350404
osa-r.5
for
4350404
osa-m.8
for
4350404
osa-u.4
for
4339430
gma-u.4
for
100811113
gma-u.4
for
100778705
sly-u.4
for
101257545
ppo-u.4
for
7464269
mtr-u.4
for
25485649
mtr-u.4
for
11414344
1 LOC4336229 pentatricopeptide repeat-containing protein At1g06710, mitochondrial 4336229 Os04g0488500 7.3 6.9
 7.6
 3.0
 3.2
0.3
 4.4
0.7
 -0.5
 4.1
 2.1
 4.9
2 LOC4335071 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 4335071 7.2 7.0
 7.3
 4.1
 3.5
3.3
 5.1
4.0
 4.5
4.0
 2.1
 2.6
1.4
 5.2
2.8
3 LOC4349477 60S ribosomal export protein NMD3 4349477 Os10g0573900 6.2 5.9
 6.4
 3.8
 3.4
1.7
 3.0
2.6
 2.5
 1.8
 2.3
 5.3
4 LOC4338555 pentatricopeptide repeat-containing protein At1g10270 4338555 Os05g0365500 6.1 6.0
 6.2
 3.4
 6.4
4.2
 8.5
5.6
 4.7
 4.8
4.2
 3.6
 5.9
5 LOC4351433 U3 small nucleolar ribonucleoprotein protein MPP10 4351433 Os12g0133900 6.1 5.5
 6.7
 4.7
2.7
 4.0
3.8
 4.7
4.5
 5.2
 5.1
2.3
 3.0
 8.1
6 LOC4333869 zinc finger protein VAR3, chloroplastic 4333869 Os03g0708900 5.8 4.9
 6.6
 2.7
 4.6
3.6
 5.9
4.5
 4.4
 2.5
 2.0
 8.6
7 LOC4352769 DEAD-box ATP-dependent RNA helicase 9-like 4352769 OSNPB_120611200 5.7 5.0
 6.3
 2.9
-0.4
 5.5
5.1
 7.4
6.6
 3.0
1.1
 6.8
6.1
 1.6
1.5
 5.7
5.3
8 LOC4332435 uncharacterized LOC4332435 4332435 Os03g0279600 5.6 5.7
 5.5
 2.3
 4.5
3.9
 5.3
4.7
 4.9
3.1
 4.4
 1.7
 3.1
9 LOC4331168 protein KINESIN LIGHT CHAIN-RELATED 2 4331168 Os02g0820300 5.2 5.5
 4.9
 5.9
 5.0
3.3
 7.7
5.1
 5.0
 6.3
 2.4
 7.6
10 LOC4346843 probable protein arginine N-methyltransferase 1 4346843 OSNPB_090359800 5.2 3.8
 6.5
 1.9
 4.1
3.5
 4.8
4.3
 3.5
2.4
 3.1
1.6
 1.9
 5.8
11 LOC4342999 transcription termination factor MTEF18, mitochondrial 4342999 Os07g0409400 5.1 4.7
 5.6
 2.6
 3.2
2.7
 4.8
2.9
 -0.3
 2.3
 1.1
0.1
 2.9
-0.1
12 LOC9270208 protein RRP6-like 2 9270208 Os10g0437200 5.1 5.6
 4.6
 1.5
-1.3
 1.4
1.0
 2.6
2.4
 2.0
 3.0
2.9
 2.7
1.9
 3.5
3.0
13 LOC4345071 aspartate carbamoyltransferase, chloroplastic-like 4345071 OSNPB_080248800 5.1 4.1
 6.0
 2.7
 0.5
0.4
 1.5
1.0
 5.2
 3.0
 2.0
-2.1
 4.9
-2.0
14 LOC4335539 uncharacterized LOC4335539 4335539 Os04g0347900 5.1 3.7
 6.5
 1.4
 1.3
0.7
 2.7
1.6
 1.5
-0.1
 0.3
-0.2
 1.5
0.7
 2.9
1.8
15 LOC4350918 uncharacterized LOC4350918 4350918 Os11g0615100 5.1 4.8
 5.3
 2.4
 3.5
 5.8
 1.6
 3.3
 1.1
0.2
 3.1
2.2
16 LOC4339430 pentatricopeptide repeat-containing protein At3g49240, mitochondrial 4339430 Os05g0534000 4.9 5.1
 4.7
 4.9
 18.4
 18.4

3.2
 3.2
17 LOC4339341 periodic tryptophan protein 2 4339341 Os05g0519500 4.9 5.5
 4.4
 3.4
 5.2
4.1
 6.8
6.5
 4.8
 6.4
5.8
 3.2
 6.9
18 LOC4325593 uncharacterized LOC4325593 4325593 Os01g0768700 4.9 4.0
 5.8
 2.8
 3.1
2.8
 3.9
3.6
 4.0
-0.1
 4.1
2.7
 1.7
 4.2
19 LOC4348309 glycine-rich RNA-binding protein 10 4348309 Os10g0322032 4.9 4.0
 5.8
 1.1
1.0
 5.0
3.8
 6.4
5.1
 5.6
4.7
 5.2
4.8
 3.1
2.2
 6.3
5.7
20 LOC4342750 protein SLOW WALKER 1 4342750 Os07g0224900 4.9 4.1
 5.6
 5.5
 8.6
5.5
 9.5
7.3
 5.7
 10.3
7.1
 3.8
 9.3
21 LOC4329957 pentatricopeptide repeat-containing protein At1g79540 4329957 Os02g0611400 4.9 4.6
 5.1
 3.3
 5.2
3.3
 7.8
4.0
 4.0
 4.0
 5.4
 6.1
22 LOC4337169 DNA-directed RNA polymerases IV and V subunit 2 4337169 Os04g0641000 4.8 5.7
 4.0
 1.9
0.5
 -0.6
-0.7
 0.5
-0.5
 2.4
-0.2
 -0.4
 2.1
1.6
 3.1
2.1
23 LOC4325739 uridine 5'-monophosphate synthase-like 4325739 OSNPB_010951200 4.8 5.4
 4.2
 1.4
0.9
 1.1
-0.2
 0.4
-0.6
 1.1
 5.1
3.0
 2.7
1.6
 4.4
3.5
24 LOC4341695 DNA-directed RNA polymerase 3B, chloroplastic 4341695 Os06g0652000 4.8 4.9
 4.7
 3.6
2.3
 3.6
3.4
 5.4
5.3
 3.5
3.2
 5.3
4.6
 2.3
1.9
 6.2
5.9
25 LOC4328041 pentatricopeptide repeat-containing protein At2g37230 4328041 Os02g0110400 4.8 5.0
 4.5
 4.0
 5.5
4.6
 7.3
6.1
 6.8
 6.3
 4.4
 7.2
26 LOC4331214 DEAD-box ATP-dependent RNA helicase 48-like 4331214 OSNPB_020826100 4.7 4.6
 4.7
 0.5
 4.5
0.9
 7.2
1.7
 5.9
 6.6
5.1
 1.3
 5.2
27 LOC4330066 pentatricopeptide repeat-containing protein At4g36680, mitochondrial 4330066 Os02g0633200 4.6 4.1
 5.2
 3.9
1.0
 5.9
5.0
 6.2
5.3
 5.3
4.6
 9.0
6.7
 4.5
0.4
 4.1
1.5
28 LOC4326607 protein ROOT PRIMORDIUM DEFECTIVE 1 4326607 Os01g0617600 4.6 4.9
 4.3
 3.5
 1.8
 2.4
 3.1
 2.1

29 LOC4326870 DNA damage-repair/toleration protein DRT102 4326870 Os01g0542000 4.6 4.5
 4.7
 2.8
 0.3
 0.0
 1.2
 0.5
 1.9
 0.9
30 LOC4334044 telomerase Cajal body protein 1 4334044 Os03g0738000 4.6 3.4
 5.7
 1.2
 -0.7
 0.3
 0.9
 4.3
 1.6
 1.9
31 LOC4326881 pentatricopeptide repeat-containing protein At4g38150 4326881 Os01g0546500 4.6 4.5
 4.6
 2.9
 0.8
0.7
 1.0
0.8
 0.6
 4.3
 1.7
0.5
 2.7
2.1
32 LOC4334285 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like 4334285 OSNPB_030775300 4.5 4.2
 4.9
 2.6
 5.1
4.5
 6.3
4.2
 4.2
 2.6
 1.7
 3.1
33 LOC4350082 DAG protein, chloroplastic 4350082 Os11g0216400 4.5 3.8
 5.1
 3.4





34 LOC4336160 pentatricopeptide repeat-containing protein At2g15630, mitochondrial 4336160 Os04g0477200 4.5 4.3
 4.7






35 LOC4331367 uncharacterized LOC4331367 4331367 Os03g0111800 4.5 4.3
 4.7
 2.0
 1.9
 3.1
 1.1
 1.1
 2.0
 6.0
36 LOC4349434 nuclear intron maturase 2, mitochondrial 4349434 Os10g0567500 4.5 4.5
 4.5
 4.4
 6.7
5.4
 7.8
7.3
 5.1
 2.5
2.0
 3.7
2.3
 5.2
3.0
37 LOC4348938 pentatricopeptide repeat-containing protein At1g61870, mitochondrial 4348938 Os10g0484900 4.5 6.0
4.0





38 LOC4333677 acidic leucine-rich nuclear phosphoprotein 32-related protein 2-like 4333677 OSNPB_030668900 4.5 4.5
 4.5
 2.7





39 LOC4327345 phosphoribosylaminoimidazole carboxylase, chloroplastic 4327345 Os01g0199900 4.4 5.2
 3.7
 2.4
 0.9
0.9
 1.6
1.1
 4.2
 3.5
0.2
 1.2
 3.9
40 LOC4343927 homeobox-DDT domain protein RLT3 4343927 Os07g0619600 4.4 6.2
 2.7
 2.3
 5.3
4.5
 5.9
5.5
 4.0
 3.8
2.9
 2.1
 8.0
41 LOC9270402 U3 small nucleolar RNA-associated protein 21 homolog 9270402 Os06g0644600 4.4 6.0
2.0
 3.3
3.0
 5.7
4.6
 3.9
 5.8
 2.0
 7.3
42 LOC4352279 glycine-rich RNA-binding protein blt801 4352279 Os12g0502200 4.4 3.4
 5.4
 1.1
1.0
 5.0
3.8
 6.4
5.1
 5.6
4.7
 5.2
4.8
 3.1
2.2
 6.3
5.7
43 LOC4325458 uncharacterized protein At2g39795, mitochondrial 4325458 Os01g0143300 4.4 3.7
 5.0
 1.9
 4.0
3.6
 6.2
5.5
 4.8
 7.5
6.2
 3.3
1.9
 5.5
5.1
44 LOC4324334 glycine-rich RNA-binding protein 4, mitochondrial 4324334 Os01g0916600 4.3 3.0
 5.7
 1.1
1.0
 5.0
3.8
 6.4
5.1
 5.6
4.7
 5.2
4.8
 3.1
2.2
 6.3
5.7
45 LOC4343611 elongator complex protein 1 4343611 Os07g0563700 4.3 4.6
 4.0
 2.9
 3.5
 3.7
 2.8
 4.4
3.3
 3.6
 6.3
46 LOC4325930 probable mitochondrial-processing peptidase subunit beta, mitochondrial 4325930 Os01g0711100 4.3 3.9
 4.7
 2.3





47 LOC4338690 SNF2 domain-containing protein CLASSY 4 4338690 Os05g0392400 4.3 3.6
 4.9
 4.0
-0.2
 0.4
-0.7
 0.1
-0.2
 1.1
0.7
0.8
 0.4
48 LOC4339664 protein WHAT'S THIS FACTOR 1 homolog 4339664 Os05g0571100 4.3 4.1
 4.4
 4.1
 4.1
2.7
 6.1
2.3
 7.5
 7.7
2.7
 -0.0
 3.6
49 LOC4347180 oryzain gamma chain-like 4347180 OSNPB_090442300 4.2 5.2
 3.3
 2.4
 0.7
 0.8
 0.2
-0.7
 -1.4
 -2.3
-2.4
 -1.9
-2.0
50 LOC4333513 protein OSB2, chloroplastic 4333513 Os03g0633900 4.2 4.2
 4.3
 1.2
0.5
 3.6
0.3
 2.7
0.6
 0.5
-1.1
 2.2
2.0
 1.1
0.7
 2.9
2.5
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