Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4350519   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 osa-r.5   4350519   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 osa-m.8   4350519   pentatricopeptide repeat-containing protein At5g04780, mitochondrial 
 gma-u.4   100781103   putative pentatricopeptide repeat-containing protein At1g68930 
 gma-u.4   100791867   pentatricopeptide repeat-containing protein At3g24000, mitochondrial 
 sly-u.4   101265126   putative pentatricopeptide repeat-containing protein At5g52630 
 ppo-u.4   18099341   pentatricopeptide repeat-containing protein At4g21065 
 mtr-u.4   11424128   putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial 

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Top 50 coexpressed genes to 4350519 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa130   Ubiquinone and other terpenoid-quinone biosynthesis  1 46 -
 osa30   Pentose phosphate pathway  1 57 -
 osa51   Fructose and mannose metabolism  1 64 -
 osa10   Glycolysis / Gluconeogenesis  1 143 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4350519 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4350519
osa-r.5
for
4350519
osa-m.8
for
4350519
gma-u.4
for
100781103
gma-u.4
for
100791867
sly-u.4
for
101265126
ppo-u.4
for
18099341
mtr-u.4
for
11424128
1 LOC4336633 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic 4336633 Os04g0557000 6.0 5.3
 6.8




2 LOC4347096 pentatricopeptide repeat-containing protein At4g30825, chloroplastic 4347096 Os09g0423300 5.4 6.6
 4.1
 2.3
 3.7
 4.0
 0.5
 1.3
3 LOC4338746 uncharacterized LOC4338746 4338746 Os05g0404400 4.8 5.6
 3.9
 2.8
2.2
 3.4
2.3
 3.5
 0.7
 2.2
4 LOC4343532 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 4343532 OSNPB_070548300 4.7 5.3
 4.1
 1.7
0.9
 2.6
0.3
 0.5
 1.4
1.0
 0.6
5 LOC4334649 DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like 4334649 OSNPB_030827700 4.6 5.2
 4.0
 3.3
3.1
 3.5
3.0
 5.5
 1.1
0.6
 2.1
6 LOC4338098 pentatricopeptide repeat-containing protein At3g49170, chloroplastic 4338098 Os05g0212100 4.6 6.1
 3.1
 2.9
 5.3
 2.2
2.8
7 LOC4346272 uncharacterized protein ycf39 4346272 Os08g0553800 4.5 4.7
 4.4
 0.3
 1.0
 0.8
 2.1
0.4
 1.6
8 LOC4351065 ADP,ATP carrier protein ER-ANT1 4351065 Os11g0661300 4.5 3.1
 5.9
 2.0
1.4
 3.3
1.5
 -0.9
 0.9
 0.7
9 LOC4341770 fructose-1,6-bisphosphatase, chloroplastic 4341770 Os06g0664200 4.4 5.0
 3.8
 1.6
0.8
 2.2
1.6
 2.1
 1.7
 2.1
10 LOC4334877 rhodanese-like domain-containing protein 8, chloroplastic 4334877 Os03g0861700 4.3 6.3
 2.3
 3.2
 2.4
 2.1
 1.7
 2.4
11 LOC4349470 uncharacterized sugar kinase slr0537 4349470 Os10g0573000 4.3 5.0
 3.6
 2.5
2.2
 1.9
1.6
 1.7
 0.8
 3.3
12 LOC4336525 elongation factor G-1, chloroplastic 4336525 Os04g0538166 4.3 3.4
 5.1
 1.9
1.6
 2.8
2.4
 3.7
 0.8
 3.1
13 LOC4331470 uncharacterized LOC4331470 4331470 Os03g0126300 4.2 6.4
 2.1
 2.3
 3.2
 2.4
 2.4
 1.6
14 LOC4352441 uncharacterized LOC4352441 4352441 Os12g0541500 4.2 4.9
 3.6
 2.7
2.4
 4.3
4.0
 4.7
 2.1
 3.3
15 LOC112936097 pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like 112936097 4.2 5.1
3.8
3.3
 4.5
3.6
 5.8
 1.7
 3.9
16 LOC4334772 uncharacterized LOC4334772 4334772 4.1 3.1
 5.1




17 LOC4329542 pentatricopeptide repeat-containing protein At3g63370, chloroplastic 4329542 Os02g0529900 4.1 3.4
 4.7




18 LOC4338449 chaperone protein dnaJ A7A, chloroplastic-like 4338449 Os05g0333600 4.1 5.3
2.7
2.1
 3.7
2.2
 0.7
 1.9
1.7
 2.7
19 LOC4326551 tryptophan--tRNA ligase, chloroplastic/mitochondrial 4326551 Os01g0743400 4.1 6.2
 1.9
 2.7
2.5
 2.2
1.8
 3.1
 1.2
 1.5
20 LOC4336891 pentatricopeptide repeat-containing protein At3g22150, chloroplastic 4336891 Os04g0602600 4.0 4.2
 3.9
 2.8
 2.8
 4.3
 2.4
 1.1
21 LOC4327084 pentatricopeptide repeat-containing protein DOT4, chloroplastic 4327084 Os01g0205200 4.0 6.5
 1.6
 1.1
0.9
 1.9
0.8

2.2
22 LOC9272053 chloroplast sensor kinase, chloroplastic 9272053 Os12g0293000 4.0 3.6
 4.4
 -0.6
-1.3
 -0.0
-0.3
 3.5
 0.9
 -0.4
23 LOC4324524 inner membrane protein PPF-1, chloroplastic 4324524 Os01g0151200 4.0 5.0
 2.9
 1.6
1.4
 2.8
1.8
 2.4
 0.2
0.2
 1.9
24 LOC4328186 uncharacterized LOC4328186 4328186 Os02g0129900 3.9 4.8
 3.1
 1.4
 3.4
 2.1
 1.8
 0.7
25 LOC4333282 pentatricopeptide repeat-containing protein At1g09900 4333282 Os03g0569800 3.9 4.1
 3.8




26 LOC4345881 haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 4345881 Os08g0485900 3.9 3.6
 4.2
 0.5
-0.8
 1.0
0.9
 2.8
 1.2
 0.6
27 LOC107276037 transcription termination factor MTERF2, chloroplastic 107276037 Os09g0560100 3.9 5.5
1.8
 0.5
 0.5
 0.9
 1.5
28 LOC4349500 probable inactive shikimate kinase like 2, chloroplastic 4349500 Os10g0577700 3.8 3.6
 4.1
 3.5
 2.7
 1.8
 2.0
 3.3
29 LOC4335835 probable plastid-lipid-associated protein 7, chloroplastic 4335835 Os04g0422000 3.8 4.4
 3.2
 1.8
1.8
 3.7
2.0
 1.2
 1.0
 1.2
30 LOC4344777 clp protease adapter protein ClpF, chloroplastic 4344777 Os08g0172200 3.8 5.0
 2.6
 0.8
-0.2
 1.8
1.2
 2.3
 -0.4
 1.9
31 LOC4326021 protein LOW PSII ACCUMULATION 1, chloroplastic 4326021 Os01g0358300 3.8 3.3
 4.2
 3.6
1.8
 4.0
2.9
 4.4
 0.4
 1.5
32 LOC4345298 uncharacterized LOC4345298 4345298 Os08g0332700 3.8 4.7
 2.8
 3.3
 3.6
 2.9
 0.5
0.3
 2.7
33 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 3.7 7.0
 0.4
 1.6
 1.9
 2.5
 1.7
0.7
 0.5
34 LOC4339930 uncharacterized LOC4339930 4339930 Os06g0116400 3.7 4.4
 3.1
 0.8
0.7
 0.7
0.4
 1.8
1.4
 0.6
0.4
 0.2
35 LOC4343702 probable homogentisate phytyltransferase 2, chloroplastic 4343702 OSNPB_070576000 3.7 3.6
 3.9
 0.2
-0.9
 0.3
-0.7
 3.9
 2.7
 1.6
36 LOC107275576 chaperone protein dnaJ A7A, chloroplastic-like 107275576 OSNPB_050334000 3.7 4.7
2.7
2.1
 3.7
2.2
 0.7
 1.9
1.7
 2.7
37 LOC4342622 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 4342622 Os07g0191500 3.7 4.2
 3.1
 2.3
 1.9
 2.3
 1.4
 1.7
38 LOC4342851 uncharacterized LOC4342851 4342851 Os07g0252800 3.7 2.9
 4.5




39 LOC4331058 chaperone protein DnaJ 4331058 Os02g0804500 3.6 4.0
 3.3
 1.3
 1.6
 1.8
 1.2
 2.5
40 LOC4352522 solute carrier family 40 member 2, chloroplastic-like 4352522 OSNPB_120562100 3.6 3.1
 4.2
 1.7
 0.3
 2.4
 1.4
 2.1
41 LOC4330652 pentatricopeptide repeat-containing protein At2g13600 4330652 Os02g0735800 3.6 4.2
 3.0




42 LOC4351990 pentatricopeptide repeat-containing protein At3g46610 4351990 Os12g0283900 3.6 3.4
 3.8
 3.4
2.7
 4.2
3.1
 2.7
 1.5
 3.7
43 LOC4338678 probable transmembrane GTPase FZO-like, chloroplastic 4338678 Os05g0390100 3.5 3.6
 3.5
 2.1
1.8
 2.7
1.8
 3.5
 1.8
 3.1
44 LOC9267438 phosphatidylinositol 4-phosphate 5-kinase 6 9267438 Os03g0356582 3.5 3.8
 3.3




45 LOC4328498 HD domain-containing protein 2 4328498 Os02g0179100 3.5 2.7
 4.4
 1.9
0.7
 1.6
1.3
 1.8
1.6
 0.4
0.0
 0.8
0.1
46 LOC4328572 lycopene beta cyclase, chloroplastic 4328572 Os02g0190600 3.5 4.7
0.9
-0.4
 2.4
1.2
 1.5
0.8
 0.5
0.1
 2.1
47 LOC4332759 pentatricopeptide repeat-containing protein At5g41170, mitochondrial 4332759 Os03g0336000 3.5 3.7
 3.3
 2.4
 2.7
 1.5
 2.3
 2.0
48 LOC4347400 uncharacterized LOC4347400 4347400 Os09g0481800 3.5 4.1
 2.9
 1.8
1.2
 1.4
1.0
 0.5
 0.9
 1.2
49 LOC4328239 ribosomal RNA small subunit methyltransferase H 4328239 Os02g0137600 3.5 3.0
 3.9
 2.3
0.7
 1.2
0.9
 2.4
 0.9
 2.6
50 LOC4344191 tyrosine-specific transport protein 4344191 Os07g0662800 3.5 3.3
 3.7




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