Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4350906   serine--tRNA ligase, chloroplastic/mitochondrial 
 osa-r.5   4350906   serine--tRNA ligase, chloroplastic/mitochondrial 
 osa-m.8   4350906   serine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.4   SRS   Seryl-tRNA synthetase 
 gma-u.4   100809150   serine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.4   101263605   serine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.4   7461791   serine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.4   11434218   serine--tRNA ligase, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 4350906 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa970   Aminoacyl-tRNA biosynthesis  6 69 8.16
 osa860   Porphyrin metabolism  3 42 4.02
 osa290   Valine, leucine and isoleucine biosynthesis  2 17 3.24
 osa1210   2-Oxocarboxylic acid metabolism  2 53 2.25
 osa1230   Biosynthesis of amino acids  2 234 -

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osa:LOC4350906 (serine--tRNA ligase, chloroplastic/mitochondrial) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4350906
osa-r.5
for
4350906
osa-m.8
for
4350906
ath-u.4
for
SRS
gma-u.4
for
100809150
sly-u.4
for
101263605
ppo-u.4
for
7461791
mtr-u.4
for
11434218
1 LOC4350988 GTPase Der 4350988 Os11g0638000 6.5 6.0
 6.9
 5.4
 4.4
 4.8
 2.8
 4.1
2 WP1 white panicle1 4342467 Os07g0163500 6.1 5.3
 6.9
 6.3
 4.3
 5.9
 1.6
 2.6
3 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 6.1 6.3
 5.9
 5.4
 3.9
1.4
 4.5
 6.3
0.4
 1.6
4 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 6.1 5.1
 7.1
 4.1
 5.8
4.4
 4.4
 5.3
 3.6
5 LOC4328965 chloroplast processing peptidase 4328965 Os02g0267000 5.9 5.3
 6.5
 3.9
 3.4
2.7
 2.9
 3.9
2.1
 1.7
6 LOC4332615 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 4332615 Os03g0308100 5.9 4.4
 7.3
 3.6
 4.7
4.1
 3.6
 3.5
2.6
 3.4
3.0
7 LOC4350829 CDK5RAP1-like protein 4350829 OSNPB_110592800 5.9 5.1
 6.6
 5.8
 5.4
5.1
 7.7
 3.0
 3.0
8 LOC4339764 protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 4339764 Os05g0587200 5.8 3.9
 7.7
 5.5
 6.2
6.0
 5.0
 3.3
 3.0
9 LOC4351976 ruBisCO large subunit-binding protein subunit alpha, chloroplastic 4351976 Os12g0277500 5.6 4.4
 6.8
 4.8
3.8
 2.7
2.6
 5.5
2.7
 4.3
3.3
 3.0
1.1
10 LOC4325344 DEAD-box ATP-dependent RNA helicase 39-like 4325344 OSNPB_010184500 5.6 3.4
 7.7
 5.2
 3.1
 5.9
 5.6
 3.8
11 LOC4332243 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic 4332243 Os03g0247000 5.5 5.7
 5.4
 4.4
2.6
 3.8
3.1
 6.1
2.9
 4.1
2.0
 4.6
2.9
12 LOC4324676 uncharacterized LOC4324676 4324676 Os01g0558800 5.4 5.3
 5.5
 3.1
 4.3
3.0
 3.8
 5.4
 2.0
13 LOC4332018 methionine--tRNA ligase, chloroplastic/mitochondrial 4332018 Os03g0209600 5.3 4.2
 6.4
 7.6
 6.1
5.5
 3.9
 4.0
 2.6
14 LOC4325168 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 4325168 Os01g0271400 5.2 4.6
 5.9
 3.1
 4.4
3.8
 4.0
 4.4
 3.1
15 LOC4332811 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic 4332811 Os03g0344900 5.2 4.5
 5.9
 4.0
 3.5
 5.5
 5.7
 3.9
16 LOC4328118 glutamate--tRNA ligase, chloroplastic/mitochondrial 4328118 Os02g0121000 5.2 5.4
 5.0
 6.0
 4.9
3.1
 5.0
 2.9
 2.3
17 LOC4351647 monothiol glutaredoxin-S12, chloroplastic-like 4351647 OSNPB_120175500 5.2 5.7
 4.7
 5.0
 1.4
0.8
 4.2
 3.4
 2.0
18 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 5.1 4.5
 5.7
 4.1
 4.0
2.7
 2.0
 2.1
 2.2
19 LOC4345098 glutamyl-tRNA reductase-binding protein, chloroplastic 4345098 Os08g0254900 5.1 5.8
 4.4
 4.5
 4.8
 3.5
 5.5
 3.6
20 LOC4339677 ketol-acid reductoisomerase, chloroplastic-like 4339677 OSNPB_050573700 5.1 4.7
 5.5
 5.5
 0.8
0.6
 4.2
1.2
 1.4
0.2
 1.8
21 LOC4339632 uncharacterized LOC4339632 4339632 Os05g0566300 5.1 4.4
 5.7
 2.5
 6.4
4.1
 2.3
 2.4
 3.3
22 LOC4334030 putative rRNA methyltransferase YlbH 4334030 Os03g0736400 5.0 4.9
 5.2
 4.1
 3.1
 3.9
 3.6
 2.9
23 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 5.0 4.6
 5.4
 3.3
3.1
 3.2
3.1
 4.3
3.0
 4.2
2.3
 4.4
24 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 5.0 4.1
 5.9
 6.7
5.3
 2.9
2.5
 4.0
 5.7
 4.1
25 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 5.0 5.9
 4.1
 2.9
 3.6
3.3
 5.7
 4.5
 2.4
26 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 5.0 3.5
 6.4
 4.6
3.3
 4.8
2.3
 6.1
5.2
 5.1
4.8
 5.2
2.9
27 LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic 4341108 Os06g0498900 5.0 2.6
 7.4
 4.8
 4.5
 3.3
 4.4
 3.4
28 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 4.9 4.0
 5.8
 4.2
 4.2
4.1
 3.0
 2.0
1.6
 4.5
29 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 4.9 4.5
 5.3
 2.3
 2.5
1.2
 4.6
 4.4
 2.7
30 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 4.9 4.2
 5.5
 3.7
 5.1
 4.4
 3.1
 2.9
31 LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial 4338540 Os05g0361900 4.8 4.4
 5.2
 5.3
0.2
 5.3
5.2
 2.1
0.5
 4.3
1.1
 0.4
-0.5
32 LOC4340109 single-stranded DNA-binding protein WHY1, chloroplastic 4340109 Os06g0145800 4.8 5.8
 3.9
 4.2
3.7
 4.0
2.6
 2.4
 4.1
1.0
 2.9
1.6
33 LOC4339342 protein DJ-1 homolog C 4339342 Os05g0519600 4.8 6.2
2.6
 6.1
1.5
 3.6
 3.4
 4.2
34 LOC4350686 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like 4350686 OSNPB_110544800 4.8 3.9
 5.6
 5.7
 4.1
3.1
 3.8
 3.8
 1.7
35 LOC4330908 isoleucine--tRNA ligase, chloroplastic/mitochondrial 4330908 Os02g0778200 4.8 4.1
 5.4
 6.0
 6.2
 5.8
 2.3
 2.4
36 LOC4338498 chlorophyll synthase, chloroplastic-like 4338498 OSNPB_050349700 4.8 5.4
 4.2
 4.7
 6.0
4.3
 5.6
 3.2
-1.7
 1.8
37 LOC4342497 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 4342497 OSNPB_070168000 4.8 3.4
 6.2
 5.6
 4.4
 4.2
 3.4
2.3
 1.8
38 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 4.8 4.7
 4.8




39 LOC4343250 asparagine--tRNA ligase, chloroplastic/mitochondrial 4343250 Os07g0485400 4.8 4.3
 5.2
 6.3
 5.0
3.3
 6.9
 2.8
2.2
 2.9
40 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 4.7 5.0
 4.3
 4.7
 6.1
5.7
 4.8
3.7
 3.0
1.9
 3.5
41 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 4.7 3.2
 6.1
 4.7
0.9
 3.9
3.9
 3.5
 3.0
1.8
 2.9
1.7
42 LOC4333613 3-isopropylmalate dehydrogenase 2, chloroplastic 4333613 Os03g0655700 4.6 3.5
 5.8
 4.1
3.6
 2.4
2.0
 2.7
 6.4
 1.1
43 LOC4335458 protein WHAT'S THIS FACTOR 1 4335458 Os04g0312100 4.6 3.7
 5.6
 0.5
 2.7
 1.2
 2.7
 2.3
44 LOC4345533 tRNA modification GTPase MnmE 4345533 Os08g0407000 4.6 4.1
 5.2
 2.9
 4.0
4.0
 2.6
 2.2
 2.1
45 LOC4349608 elongation factor P 4349608 Os11g0116400 4.6 4.0
 5.2
 4.6
 4.4
3.5
 3.5
 5.2
 3.1
46 LOC4342588 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic 4342588 Os07g0185300 4.6 4.0
 5.2
 6.8
0.4
 2.1
1.2
 4.9
 2.8
 1.1
47 LOC4350785 sec-independent protein translocase protein TATB, chloroplastic-like 4350785 OSNPB_110580800 4.6 4.0
 5.3
 3.0
 5.8
3.8
 4.8
 5.3
4.4
 5.9
48 LOC4346927 protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic 4346927 Os09g0380200 4.5 5.0
 4.0
 4.2
 4.2
2.8
 3.5
 2.1
 4.0
49 LOC4346294 28 kDa ribonucleoprotein, chloroplastic 4346294 Os08g0557100 4.5 3.6
 5.4
 4.7
3.0
 6.8
4.8
 6.0
 4.6
4.2
 4.3
1.6
50 LOC4335917 uncharacterized LOC4335917 4335917 Os04g0438300 4.5 4.3
 4.7
 2.0
 3.1
1.2
2.4
 2.7
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