Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4351050   peptide chain release factor APG3, chloroplastic 
 osa-r.5   4351050   peptide chain release factor APG3, chloroplastic 
 osa-m.8   4351050   peptide chain release factor APG3, chloroplastic 
 ath-u.4   APG3   Peptide chain release factor 1 
 gma-u.4   100805037   peptide chain release factor APG3, chloroplastic 
 gma-u.4   100777225   peptide chain release factor APG3, chloroplastic 
 sly-u.4   101256123   peptide chain release factor APG3, chloroplastic 
 ppo-u.4   7457960   peptide chain release factor APG3, chloroplastic 
 mtr-u.4   11430689   peptide chain release factor APG3, chloroplastic 

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Top 50 coexpressed genes to 4351050 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  8 336 6.33
 osa3060   Protein export  4 49 5.46
 osa970   Aminoacyl-tRNA biosynthesis  3 70 3.36
 osa380   Tryptophan metabolism  1 60 -
 osa195   Photosynthesis  1 77 -

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osa:LOC4351050 (peptide chain release factor APG3, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4351050
osa-r.5
for
4351050
osa-m.8
for
4351050
ath-u.4
for
APG3
gma-u.4
for
100805037
gma-u.4
for
100777225
sly-u.4
for
101256123
ppo-u.4
for
7457960
mtr-u.4
for
11430689
1 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 6.4 6.4
 6.5
 10.8
 3.3
2.4
 3.2
3.1
 7.5
 2.6
 2.7
2 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 6.2 4.8
 7.5
 5.8
 2.1
 5.5
 5.1
3.5
 1.7
0.2
 2.3
3 LOC9267495 signal recognition particle 54 kDa protein, chloroplastic 9267495 Os11g0153600 5.9 5.3
 6.5
 7.3
 3.7
3.5
 5.9
3.8
 3.7
 3.3
3.2
 5.7
4 LOC4325387 cell division protein FtsY homolog, chloroplastic 4325387 Os01g0958100 5.9 4.7
 7.0
 5.9
 1.0
 1.7
 4.8
 3.1
 3.5
5 LOC4343267 peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic 4343267 Os07g0490400 5.8 6.3
 5.3
 5.2
 3.6
2.6
 5.0
1.7
 3.2
 0.1
 2.2
6 LOC4324255 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 4324255 Os01g0705300 5.8 5.2
 6.3
 5.8
 3.3
1.7
 3.8
2.5
 4.6
 0.5
 3.3
7 LOC4334910 uncharacterized LOC4334910 4334910 Os04g0105700 5.7 4.5
 6.9
 7.4
 2.7
 5.6
 2.7
 0.8
 3.7
8 LOC4349809 signal recognition particle 54 kDa protein, chloroplastic 4349809 Os11g0153700 5.7 5.6
 5.9
 7.3
 3.7
3.5
 5.9
3.8
 3.7
 3.3
3.2
 5.7
9 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 5.5 4.9
 6.1
 3.3
 3.2
1.4
 5.2
4.9
 6.3
 1.9
 2.2
10 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 5.4 4.1
 6.7
 5.6
 3.1
3.1
 4.5
3.6
 5.4
 1.1
 3.8
11 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 5.4 3.5
 7.3
 2.7
0.9
 1.7
 3.9
 2.6
1.6
 1.6
0.9
 4.2
12 LOC4330582 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 4330582 Os02g0725200 5.3 4.6
 6.1
 9.2
 4.4
 5.2
 4.4
 2.9
 3.2
13 LOC4332018 methionine--tRNA ligase, chloroplastic/mitochondrial 4332018 Os03g0209600 5.3 5.7
 4.8
 5.4
 2.7
1.6
 4.1
3.9
 4.1
 1.0
 3.0
14 LOC4350441 RNA polymerase sigma factor sigB 4350441 Os11g0448400 5.3 5.9
 4.7
 6.3
 3.4
3.3
 5.8
4.8
 6.2
 0.5
-0.2
 6.9
15 LOC4328236 50S ribosomal protein L3, chloroplastic 4328236 Os02g0137200 5.2 4.7
 5.7
 4.5
 1.0
0.9
 3.3
2.5
 4.1
 0.7
 1.7
16 SNAT1 serotonin N-acetyltransferase 1, chloroplastic-like 4339123 OSNPB_050481000 5.1 5.1
 5.1
 1.0
 2.7
 1.6
 2.8
 3.4
2.1
 3.0
17 LOC4324505 aspartate--tRNA ligase, chloroplastic/mitochondrial 4324505 Os01g0153400 5.1 6.5
 3.7
 6.9
 3.1
2.8
 3.8
3.3
 3.8
 1.0
1.0
 1.7
1.2
18 LOC4342480 proline--tRNA ligase, chloroplastic/mitochondrial 4342480 Os07g0165000 5.1 4.2
 6.0
 7.1
 3.1
2.9
 4.6
3.8
 7.7
 -0.6
 5.0
19 LOC4349080 endonuclease MutS2 4349080 Os10g0509000 5.0 4.9
 5.0
 2.4
 2.6
 2.4
 2.7
 2.2
1.3
 1.9
20 LOC4352705 renalase 4352705 Os12g0597400 4.9 5.1
 4.8
 4.2
 2.1
 3.5
 4.1
 1.3
 2.0
21 LOC4334445 probable GTP-binding protein OBGC2 4334445 OSNPB_030799700 4.9 4.9
 5.0
2.8
1.6
 4.3
2.2
 4.5
 0.4
 2.9
22 LOC4337588 uncharacterized protein At5g02240 4337588 Os05g0110300 4.8 4.8
 4.8
 5.6
0.9
 1.1
-0.8
 1.7
0.3
 2.4
 0.2
 0.3
0.1
23 LOC4342342 peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic 4342342 Os07g0133700 4.8 4.5
 5.2
 2.5
 3.6
 2.2
 3.7
 3.1
 3.2
24 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 4.8 5.3
 4.2
 5.1
 4.9
4.1
 7.7
6.6
 4.0
3.5
 3.5
1.9
 3.9
25 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 4.8 4.4
 5.1
 5.0
 1.2
0.8
 4.7
3.9
 4.4
 0.6
 5.9
26 LOC4343662 ribosome-recycling factor, chloroplastic 4343662 OSNPB_070570700 4.7 3.6
 5.9
 8.4
 2.5
 5.0
 6.0
 3.4
 4.2
27 LOC4325601 protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like 4325601 Os01g0769900 4.7 5.5
 3.9
 6.4
 2.7
 4.6
 5.7
 1.5
 2.0
28 LOC4325242 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 4325242 Os01g0960300 4.7 4.3
 5.0
 2.6
 3.0
2.7
 3.4
3.4
 5.5
 0.4
 4.5
29 LOC4332626 pentatricopeptide repeat-containing protein At3g06430, chloroplastic 4332626 Os03g0309800 4.7 4.2
 5.1
 2.9
 0.7
0.2
 2.1
1.4
 3.7
2.0
 -0.1
-0.2
 1.2
0.5
30 LOC4324026 protein FLUORESCENT IN BLUE LIGHT, chloroplastic 4324026 Os01g0510600 4.7 5.0
 4.3
 4.6
 1.0
0.4
 1.9
1.9
 4.0
1.2
 0.1
 2.4
31 LOC4332730 uncharacterized LOC4332730 4332730 Os03g0331600 4.7 3.5
 5.8
 2.9
 1.0
0.9
 4.1
3.1
 3.3
 0.7
 3.0
32 LOC4343626 peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic 4343626 Os07g0565600 4.7 5.1
 4.2
 5.3
 3.0
2.9
 4.3
2.9
 3.0
 -0.1
 1.4
33 LOC4342685 aminopeptidase P2 4342685 Os07g0205700 4.6 4.7
 4.5
 2.6
 3.5
 4.1
 4.2
 3.4
 0.9
34 wsl6 white stripe leaf6 9271571 OSNPB_050567300 4.6 4.5
 4.7
 9.4
 3.0
0.6
 4.4
1.0
 3.8
 2.7
 2.4
35 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 4.6 4.0
 5.2
 5.6
 3.0
1.5
 5.3
5.0
 5.4
 -0.5
 4.3
36 LOC4341789 14 kDa zinc-binding protein 4341789 Os06g0667500 4.6 4.1
 5.1
 2.0
0.3
 1.9
-0.8
 2.6
-0.8
 1.6
-1.1
 2.6
-0.5
 3.3
-0.1
37 LOC4329119 uncharacterized LOC4329119 4329119 Os02g0307800 4.6 4.2
 5.0
 4.4
 2.2
1.8
 3.7
2.0
 2.7
 1.1
 1.0
-0.0
38 LOC4324676 uncharacterized LOC4324676 4324676 Os01g0558800 4.6 4.7
 4.5
 4.3
 2.7
1.2
 4.2
2.0
 3.3
 -0.0
 -0.6
39 LOC4345097 preprotein translocase subunit SECY, chloroplastic-like 4345097 OSNPB_080254500 4.6 3.9
 5.3
 2.5
 3.4
 4.2
 5.3
 0.8
0.7
 2.7
40 LOC4345667 uncharacterized LOC4345667 4345667 Os08g0436600 4.6 4.4
 4.7
 7.3
 2.1
1.6
 5.6
3.3
 3.3
 2.4
 2.5
41 LOC4349290 carotene epsilon-monooxygenase, chloroplastic 4349290 Os10g0546600 4.5 3.0
 6.1
 6.2
 1.9
1.2
 4.9
2.2
 3.9
 1.1
 1.6
42 LOC4331411 protein-ribulosamine 3-kinase, chloroplastic-like 4331411 OSNPB_030117800 4.5 4.9
 4.1
 3.0
 2.4
 2.1
 2.6
 1.1
 1.7
43 LOC4333848 30S ribosomal protein S13, chloroplastic 4333848 Os03g0704000 4.5 3.3
 5.8
 4.3
 2.9
2.1
 4.7
3.5
 5.2
 1.8
0.6
 4.4
44 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 4.5 3.6
 5.4
 6.1
 1.4
1.1
 4.6
2.5
 5.5
 1.5
 2.5
45 LOC4334632 transcription termination/antitermination protein NusG 4334632 Os03g0825500 4.5 4.3
 4.7
 5.2
 2.8
 3.9
 4.3
 1.4
 2.7
46 LOC4348816 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic 4348816 Os10g0461100 4.5 2.9
 6.0
 3.9
 2.0
1.5
 3.7
2.7
 2.9
 4.7
3.7
 3.3
47 LOC4350683 GDT1-like protein 2, chloroplastic 4350683 OSNPB_110544500 4.4 3.3
 5.6
 1.8
 3.1
 4.6
 3.0
 2.5
-0.5
 2.2
48 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 4.4 4.3
 4.6
 7.1
 3.1
 3.2
 5.0
 4.5
 3.7
49 wgl2 white green leaf2 4334247 Os03g0769100 4.4 2.6
 6.2
 4.3
 2.3
1.8
 4.8
3.8
 6.1
 0.7
-0.4
 2.1
50 LOC4333096 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic 4333096 Os03g0411500 4.4 4.6
 4.2
 5.1
 1.7
0.8
 5.1
3.4
 5.5
 2.3
2.3
 1.9
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