Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4351246   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 osa-r.5   4351246   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 osa-u.4   4349537   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 ath-u.4   HCF152   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.4   100808587   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 sly-u.4   104649090   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 ppo-u.4   7465297   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 
 mtr-u.4   25484046   pentatricopeptide repeat-containing protein At3g09650, chloroplastic 

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Top 50 coexpressed genes to 4351246 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  3 76 3.26
 osa61   Fatty acid biosynthesis  1 47 -
 osa260   Glycine, serine and threonine metabolism  1 67 -
 osa190   Oxidative phosphorylation  1 156 -
 osa1240   Biosynthesis of cofactors  2 248 -

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osa:LOC4351246 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4351246
osa-r.5
for
4351246
osa-u.4
for
4349537
ath-u.4
for
HCF152
gma-u.4
for
100808587
sly-u.4
for
104649090
ppo-u.4
for
7465297
mtr-u.4
for
25484046
1 LOC4349537 pentatricopeptide repeat-containing protein At3g09650, chloroplastic 4349537 Os11g0103000 12.8 19.7
 12.8




2 LOC4347937 probable pyridoxal 5'-phosphate synthase subunit PDX1.2 4347937 OSNPB_100100700 3.8 5.1
 4.2
3.0
 4.2
3.0
 2.4
1.9
 2.3
 2.0
1.0
 2.0
3 LOC4352930 uncharacterized LOC4352930 4352930 Os12g0641300 3.7 5.4
 3.0
 1.9
 2.7
 1.2
 2.0
 3.4
4 LOC4324165 anthocyanidin 5,3-O-glucosyltransferase 4324165 Os01g0734600 3.6 4.7
 2.8




5 LOC4325558 heme-binding protein 2 4325558 Os01g0210500 3.5 4.7
 3.2
 3.9
0.1
 0.4
-0.1
 3.3
1.1
 2.3
 2.6
6 LOC4324453 light-harvesting complex-like protein OHP2, chloroplastic 4324453 Os01g0589800 3.5 4.8
 2.8
 2.4
 1.0
1.0
 3.5
2.0
 3.7
2.8
 5.4
7 LOC4338057 thioredoxin-like 2, chloroplastic 4338057 OSNPB_050200100 3.5 4.6
 2.4
 -0.3
-1.2
 3.5
1.8
 1.9
1.5
 1.3
1.3
 2.9
8 LOC4331552 uncharacterized LOC4331552 4331552 Os03g0137600 3.5 4.4
 3.3
 1.0
 2.1
 2.8
 2.8
 1.6
9 LOC4342113 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic-like 4342113 OSNPB_060725900 3.5 4.5
 2.9
 5.3
5.3
 7.7
7.1
 3.6
 5.8
5.3
 5.6
10 LOC4330131 thylakoid lumenal protein TL20.3, chloroplastic 4330131 Os02g0643500 3.4 4.7
 2.4
 1.3
 2.6
 2.6
 1.0
 3.8
11 LOC4341018 peptide methionine sulfoxide reductase B1, chloroplastic-like 4341018 OSNPB_060472000 3.4 4.7
 2.9
 2.1
 2.3
 2.5
 0.5
 2.1
12 LOC4347913 probable anion transporter 4, chloroplastic 4347913 OSNPB_090570400 3.4 4.1
 2.6
1.2
 4.8
1.4
 1.6
1.1
 3.0
2.5
 1.5
1.5
 3.1
1.6
13 LOC4347153 uncharacterized LOC4347153 4347153 Os09g0436900 3.3 4.1
 2.8
 0.2
 1.8
 2.5
 2.8
 2.6
14 LOC4342649 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic 4342649 Os07g0196200 3.2 4.2
 2.9
 1.2
 1.7
0.2
 0.4
 1.2
-0.3
 1.5
-0.4
15 LOC4336185 uncharacterized LOC4336185 4336185 Os04g0481300 3.2 4.0
 2.2
 3.0
 0.0
 1.6
 0.5
 1.0
16 LOC4349351 transcription factor UNE10 4349351 Os10g0556200 3.2 4.6
 2.8
 2.3
 1.3
1.2
 1.0
 1.6
-0.7
 0.5
17 LOC4334225 uncharacterized LOC4334225 4334225 Os03g0765900 3.2 4.5
 2.5
 0.9
 1.7
1.5
 2.7
2.6
 1.1
0.7
 1.8
18 LOC4348473 protein NRT1/ PTR FAMILY 8.3 4348473 Os10g0370700 3.1 3.9
 2.3
-0.2




19 LOC4343366 ATP synthase subunit gamma, chloroplastic 4343366 Os07g0513000 3.1 4.1
 2.2
 0.9
 2.9
1.5
 2.1
 0.5
0.5
 3.2
20 LOC4333316 membrane metalloprotease ARASP, chloroplastic 4333316 Os03g0579000 3.1 3.7
 2.8
 4.8
3.9
 5.0
4.6
 3.9
 2.3
2.1
 4.5
21 LOC4324933 photosystem II 22 kDa protein, chloroplastic 4324933 Os01g0869800 3.1 4.5
 2.6
2.4
 0.8
 1.8
 1.5
 2.0
 2.1
22 LOC4346272 uncharacterized protein ycf39 4346272 Os08g0553800 3.1 3.9
 2.4
 3.4
 2.4
 2.5
 2.5
0.3
 3.0
23 LOC4350631 uncharacterized LOC4350631 4350631 Os11g0528500 3.1 3.7
 2.2
 2.5
 1.5
0.6
 3.1
 2.8
 3.7
24 LOC4329953 protein TAB2 homolog, chloroplastic-like 4329953 Os02g0610800 3.1 4.0
 2.6
 3.1
 2.1
2.0
 1.7
 1.3
0.9
 3.7
1.6
25 LOC4340967 anthocyanidin 5,3-O-glucosyltransferase 4340967 Os06g0343600 3.0 4.1
 2.4




26 LOC4342871 uncharacterized LOC4342871 4342871 Os07g0260300 3.0 4.2
 2.8
 0.2
 1.8
1.1
 1.1
 1.0
 2.2
27 LOC4332843 divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic 4332843 OSNPB_030351200 3.0 3.7
 2.9
 1.2
 2.2
1.2
 1.5
 3.3
 2.5
28 LOC4337051 aminomethyltransferase, mitochondrial 4337051 Os04g0623800 3.0 4.1
 2.7
 -0.3
 1.5
0.4
 0.3
 2.3
0.4
 1.4
29 LOC4331773 uncharacterized LOC4331773 4331773 Os03g0170500 3.0 4.3
 2.5
 2.9
 1.9
1.6
 3.3
 1.7
 2.1
30 LOC4350172 uncharacterized LOC4350172 4350172 Os11g0242400 3.0 3.9
 1.6
 1.6
 1.5
 2.0
 2.7
 4.7
31 LOC4336530 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like 4336530 OSNPB_040539000 3.0 4.2
 2.9
 0.4
 1.6
1.1
 2.2
 0.8
-0.1
 1.3
32 LOC9270292 protein LOW PSII ACCUMULATION 1, chloroplastic 9270292 Os04g0507100 3.0 3.6
 3.0
 4.7
 1.7
 4.0
 2.4
 2.4
33 LOC4336064 uncharacterized LOC4336064 4336064 Os04g0462300 2.9 3.5
 2.7
 0.1
 4.0
1.2
 1.6
 2.3
 2.7
34 LOC4341657 uncharacterized methyltransferase At2g41040, chloroplastic 4341657 Os06g0646000 2.9 3.9
 2.2
 4.2
 2.9
2.5
 3.0
1.4
 0.7
 0.5
35 LOC4327544 psbP domain-containing protein 6, chloroplastic 4327544 Os01g0805300 2.9 4.2
 2.4
 0.2
 0.8
0.7
 0.8
 -0.6
 1.2
36 LOC4329668 protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 4329668 Os02g0556800 2.9 3.3
 2.5
 0.9
 1.3
0.9
 1.8
 1.6
 3.8
37 LOC4342458 3-oxo-5-alpha-steroid 4-dehydrogenase 2 4342458 Os07g0162100 2.9 4.1
 1.9
 -1.2
 0.6
-1.1
 1.3
1.1
 1.1
0.4
 0.6
0.1
38 LOC4343598 NADPH-dependent aldehyde reductase-like protein, chloroplastic 4343598 Os07g0561500 2.9 4.2
 2.8
0.9
 0.0
-0.3
 0.0
 1.3
-0.7
 1.3
1.0
 1.5
0.7
39 LOC4341796 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like 4341796 OSNPB_060669400 2.8 3.3
 2.3
0.5
 4.2
2.9
 2.4
2.3
 5.3
0.9
 4.1
1.5
 5.6
2.3
40 LOC4350948 stress enhanced protein 1, chloroplastic 4350948 Os11g0621400 2.8 3.6
 2.5
1.6
 0.7
 2.3
1.3
 1.8
 2.7
-0.9
 2.2
41 LOC4330464 protein RADIALIS-like 3 4330464 Os02g0706400 2.8 3.9





42 LOC4347871 28 kDa ribonucleoprotein, chloroplastic 4347871 Os09g0565200 2.8 3.8
 2.1
1.6
 2.0
0.3
 4.0
3.4
 3.7
 4.4
3.9
 3.0
2.2
43 LOC4339227 scopoletin glucosyltransferase 4339227 Os05g0500000 2.8 4.0
 1.9
1.2




44 LOC4343582 putative PAP-specific phosphatase, mitochondrial 4343582 Os07g0558300 2.8 3.4
 2.7
0.8
 -0.6
 0.7
 1.1
-0.0
 0.2
 0.6
45 LOC4325645 protein PLASTID MOVEMENT IMPAIRED 2 4325645 Os01g0692300 2.8 3.6
 2.4
 3.5
 1.2
0.7
 1.6
 0.6
 1.4
46 LOC4330459 pheophytinase, chloroplastic 4330459 Os02g0705100 2.7 3.5
 2.4
 3.3
 1.6
 0.8
 0.8
 4.6
47 LOC4347051 uncharacterized LOC4347051 4347051 Os09g0413700 2.7 3.5
 2.0
 1.2
 3.7
2.4
 1.0
 2.2
 1.1
48 LOC4346326 photosystem I reaction center subunit II, chloroplastic 4346326 Os08g0560900 2.7 4.0
 2.2
 1.7
1.3
 2.6
1.8
 0.9
 1.1
0.5
 0.9
49 LOC4335778 uncharacterized LOC4335778 4335778 Os04g0412100
2.7
1.7
 2.9
2.2
 1.0
0.7
 2.5
 1.0
0.5
 2.6
1.6
50 LOC4341063 protein BOLA4, chloroplastic/mitochondrial 4341063 Os06g0484600 2.7 3.6
 3.1
 -0.4
 1.7
 1.6
 0.5
 -0.2
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