Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4351976   ruBisCO large subunit-binding protein subunit alpha, chloroplastic 
 osa-r.5   4351976   ruBisCO large subunit-binding protein subunit alpha, chloroplastic 
 osa-m.8   4351976   ruBisCO large subunit-binding protein subunit alpha, chloroplastic 
 osa-u.4   9268167   ruBisCO large subunit-binding protein subunit alpha 
 osa-u.4   9270136   ruBisCO large subunit-binding protein subunit alpha 
 ath-u.4   Cpn60alpha2   TCP-1/cpn60 chaperonin family protein 
 ath-u.4   CPN60A   chaperonin-60alpha 
 gma-u.4   100795157   chaperonin 60 subunit alpha 2, chloroplastic 
 gma-u.4   100786724   chaperonin 60 subunit alpha 2, chloroplastic 
 gma-u.4   100775463   ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like 
 sly-u.4   101259113   chaperonin 60 subunit alpha 2, chloroplastic 
 sly-u.4   101266598   ruBisCO large subunit-binding protein subunit alpha 
 sly-u.4   101265242   ruBisCO large subunit-binding protein subunit alpha, chloroplastic 
 ppo-u.4   18105953   chaperonin 60 subunit alpha 2, chloroplastic 
 ppo-u.4   18098223   ruBisCO large subunit-binding protein subunit alpha 
 ppo-u.4   7491161   ruBisCO large subunit-binding protein subunit alpha 
 mtr-u.4   25492419   ruBisCO large subunit-binding protein subunit alpha, chloroplastic 
 mtr-u.4   11443427   chaperonin 60 subunit alpha 2, chloroplastic 

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Top 50 coexpressed genes to 4351976 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa3010   Ribosome  13 336 12.80
 osa4141   Protein processing in endoplasmic reticulum  3 191 2.12
 osa4146   Peroxisome  2 92 -
 osa3018   RNA degradation  2 112 -
 osa4626   Plant-pathogen interaction  2 218 -

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osa:LOC4351976 (ruBisCO large subunit-binding protein subunit alpha, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4351976
osa-r.5
for
4351976
osa-m.8
for
4351976
osa-u.4
for
9268167
osa-u.4
for
9270136
ath-u.4
for
Cpn60alpha2
ath-u.4
for
CPN60A
gma-u.4
for
100795157
gma-u.4
for
100786724
gma-u.4
for
100775463
sly-u.4
for
101259113
sly-u.4
for
101266598
sly-u.4
for
101265242
ppo-u.4
for
18105953
ppo-u.4
for
18098223
ppo-u.4
for
7491161
mtr-u.4
for
25492419
mtr-u.4
for
11443427
1 LOC4339910 ruBisCO large subunit-binding protein subunit beta, chloroplastic 4339910 Os06g0114000 17.0 18.1
 16.0
 2.5
1.7
 11.0
4.0
 2.8
2.6
 17.3
15.3
 2.1
0.9
 2.9
1.7
 12.0
11.5
 5.9
1.9
 15.2
8.8
 2.2
1.0
 1.6
1.2
 8.8
7.0
 18.2
13.7
 13.6
6.9
 2.9
2.7
2 LOC4340394 20 kDa chaperonin, chloroplastic 4340394 Os06g0197575 10.8 16.1
4.1
1.9
 3.8
1.5
 3.3
 18.4
 0.3
0.2
 1.7
1.2
 13.7
10.7
 2.7
2.0
 11.9
7.1
 2.6
1.6
 0.9
0.3
 8.9
6.3
 13.8
7.8
 8.1
5.9
 2.1
1.9
3 LOC4349426 10 kDa chaperonin 1, chloroplastic 4349426 Os10g0566700 10.1 10.0
 10.2
 1.9
 3.4
 1.9
1.1
 5.1
4.5
 0.8
0.5
 1.1
0.5
 10.3
9.9
 0.9
 6.0
 1.1
 1.0
-1.0
 6.0
0.9
 6.2
0.6
 7.6
 1.3
4 LOC4332957 RNA-binding protein CP29B, chloroplastic 4332957 Os03g0376600 9.8 10.1
 9.6
 4.1
0.9
 -0.5
-0.7
 1.4
0.2
 4.8
4.3
 1.1
0.5
 1.1
0.9
 4.8
3.6
 3.1
1.1
 4.6
3.1
 0.8
-0.2
 -0.4
-0.4
 3.4
1.9
 6.7
2.9
 6.5
 3.1
5 LOC4338354 stromal 70 kDa heat shock-related protein, chloroplastic 4338354 Os05g0303000 9.1 10.2
 7.9
 2.8
1.7
 4.4
0.7
 3.3
3.0
 15.8
11.7
 1.0
0.4
 -0.1
-0.3
 8.8
8.2
 3.2
-0.6
 9.5
2.3
 1.2
-0.9
 1.5
1.2
 6.3
6.0
 10.7
7.9
 10.9
 3.2
6 LOC4332868 50S ribosomal protein L6, chloroplastic 4332868 Os03g0356300 8.8 9.2
 8.5
 1.6
1.1
 0.2
-1.7
 0.5
 3.2
 0.5
-0.4
 0.2
0.1
 4.8
4.2
 -0.6
 2.4
 -1.1
 -0.5
 2.8
 3.5
 3.3
 2.1
7 LOC4340846 trigger factor-like protein TIG, Chloroplastic 4340846 Os06g0308000 8.7 7.6
 9.9
 1.7
 0.1
 2.8
 7.4
 1.0
0.7
 2.0
1.2
 3.7
3.1
 2.6
 5.8
 -0.8
 -0.0
 0.9
 3.5
 3.4
 3.5
8 LOC4347356 heat shock protein 90-5, chloroplastic 4347356 Os09g0474300 8.4 8.9
 8.0
 4.9
4.2
 4.3
3.5
 7.0
 15.6
 2.4
2.0
 2.0
1.2
 9.8
7.1
 3.6
 9.4
 1.3
 1.6
1.4
 7.7
3.5
 9.3
4.9
 7.1
 2.7
9 LOC4347161 20 kDa chaperonin, chloroplastic 4347161 Os09g0438700 8.4 8.9
 8.0
 4.1
1.9
 3.8
1.5
 3.3
 18.4
 0.3
0.2
 1.7
1.2
 13.7
10.7
 2.7
2.0
 11.9
7.1
 2.6
1.6
 0.9
0.3
 8.9
6.3
 13.8
7.8
 8.1
5.9
 2.1
1.9
10 LOC4325462 uncharacterized protein At2g39795, mitochondrial 4325462 Os01g0143800 8.2 8.3
 8.2
 3.7
 1.2












11 LOC4346136 glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like 4346136 OSNPB_080532200 8.0 7.9
 8.1
 0.9
 0.3
 2.2
1.5
 7.8
6.1
 0.1
-0.1
 0.3
-0.5
 6.0
5.9
 1.0
 5.7
 1.7
 2.0
 4.4
 6.4
 5.9
 2.1
12 LOC4325010 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 4325010 Os01g0901900 7.6 6.6
 8.6
 4.2
 0.1
 8.8
 6.8
 2.2
1.5
 2.6
1.2
 4.3
2.4
 4.0
 5.2
 -0.8
 0.7
 4.1
 3.4
 4.9
 3.6
13 LOC4333618 transcription antitermination protein NusB 4333618 Os03g0656900 7.5 6.9
 8.1
 3.0
 -1.9
 3.7
 3.6
 2.3
2.1
 2.1
1.7
 5.4
4.0
 3.6
 2.4
 -1.1
 1.0
 4.0
 5.6
 3.7
 3.7
14 LOC4325555 50S ribosomal protein L13, chloroplastic 4325555 Os01g0749200 7.5 6.9
 8.0
 -0.1
 -0.5
 0.3
 5.8
 -0.4
 -0.0
 3.7
 0.5
0.2
 2.5
2.4
 0.3
-0.4
 0.5
0.0
 3.7
3.2
 3.6
2.1
 4.2
 1.5
15 LOC4338005 30S ribosomal protein S31, chloroplastic 4338005 Os05g0186000 7.5 7.2
 7.7
 0.2
 -0.8
 -0.3
 2.6
 -0.2
-0.9
 -1.1
-1.9
 3.8
2.4
 -0.7
 2.8
 -0.3
 -0.3
 1.8
 3.5
 4.1
 0.5
16 LOC4343267 peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic 4343267 Os07g0490400 7.4 6.0
 8.7
 1.8
 -0.2
 1.8
 2.3
 1.6
1.4
 2.3
2.0
 2.7
0.3
 -0.3
 1.3
 -0.5
 0.4
 2.0
 1.5
 1.0
 1.9
17 LOC4331459 50S ribosomal protein L5, chloroplastic-like 4331459 OSNPB_030125000 7.2 8.2
 6.2
 0.2
 0.4
 0.9
 6.3
 1.0
0.4
 0.4
-0.4
 5.3
3.6
 1.3
 4.3
 -1.3
 0.3
-1.3
 3.9
2.4
 5.1
2.3
 3.4
 0.8
18 LOC4345893 heat shock protein 90-5, chloroplastic 4345893 Os08g0487800 7.1 7.3
 6.9
 4.9
4.2
 4.3
3.5
 7.0
 15.6
 2.4
2.0
 2.0
1.2
 9.8
7.1
 3.6
 9.4
 1.3
 1.6
1.4
 7.7
3.5
 9.3
4.9
 7.1
 2.7
19 LOC4328072 uncharacterized LOC4328072 4328072 Os02g0115600 7.0 6.3
 7.7
 1.8
 0.7
 0.5
 4.2
 2.7
 3.4
 2.8
 1.8
 3.3
 -0.3
 1.4
 1.4
 2.2
 0.6
 2.7
20 LOC4336056 30S ribosomal protein 3, chloroplastic 4336056 Os04g0461100 7.0 6.3
 7.7
 0.2
 -1.0
 1.9
0.7
 1.5
-0.2
 -1.0
 -1.4
 3.7
 0.2
-0.8
 2.6
0.2
 -0.8
-0.8
 0.2
-0.1
 3.7
3.7
 3.2
2.9
 2.7
 0.8
21 LOC4334555 50S ribosomal protein L17, chloroplastic 4334555 Os03g0815400 7.0 5.3
 8.8
 -0.6
 -0.5
 0.2
 4.4
 0.4
0.4
 -0.2
-0.8
 4.8
4.6
 1.1
0.7
 4.4
4.4
 0.1
-0.2
 0.8
-1.4
 4.0
1.6
 4.2
4.1
 3.2
 0.6
22 LOC4324049 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic 4324049 Os01g0507900 7.0 6.5
 7.4
 2.8
 -0.2
 1.8
 2.2
 1.1
-0.1
 0.3
0.2
 5.4
2.2
 1.2
 5.5
 -0.6
 0.6
 2.0
 4.4
 3.5
 3.6
23 LOC4337588 uncharacterized protein At5g02240 4337588 Os05g0110300 7.0 6.7
 7.2
 2.3
1.1
 4.5
-0.3
 0.9
-0.6
 5.6
1.3
 1.2
0.2
 1.1
0.7
 2.6
-0.0
 -1.0
 3.9
 -0.0
 -1.2
 1.9
 2.0
 1.0
0.5
 1.0
0.3
24 LOC4341869 50S ribosomal protein L24, chloroplastic 4341869 Os06g0683200 7.0 7.1
 6.8
 0.3
 -0.7
 0.0
 3.0
 0.2
-0.4
 1.0
0.5
 6.5
5.2
 -0.0
 4.5
 0.2
 0.3
 1.3
 2.3
 2.6
 1.2
25 LOC4337506 30S ribosomal protein S17, chloroplastic-like 4337506 Os04g0691600 6.9 6.5
 7.4
 0.6
 -1.1

-0.8
-0.9
 -0.6
-1.0
 3.2
2.9
 -0.6
 3.4
 -0.6
 -0.3
 2.2
 4.0
 2.0
 -0.3
26 LOC4330964 uncharacterized LOC4330964 4330964 Os02g0788500 6.9 7.6
 6.2
 2.8
0.4
 -0.1
-0.5
 0.7
 0.5
 1.4
1.0
 2.8
1.9
 1.3
0.3
 0.8
 2.0
 0.1
 0.5
-0.3
 3.6
2.5
 3.8
1.7
 2.7
 1.3
27 wgl2 white green leaf2 4334247 Os03g0769100 6.7 5.7
 7.8
 0.4
 -0.4
 -0.1
 3.1
 0.1
0.1
 0.6
-0.1
 4.4
3.0
 0.3
 5.0
 -0.9
 0.7
0.1
 2.7
2.5
 3.6
2.2
 3.0
 0.6
28 LOC9270258 protease Do-like 2, chloroplastic 9270258 Os05g0147500 6.7 6.3
 7.2
 2.7
 -0.7
 0.2
 2.9
 2.8
2.6
 2.9
1.7
 4.8
3.0
 1.9
0.8
 3.3
2.7
 0.4
-0.2
 1.0
0.9
 2.0
0.5
 3.6
0.2
 1.5
 2.1
29 LOC4329578 2-Cys peroxiredoxin BAS1, chloroplastic-like 4329578 OSNPB_020537700 6.7 7.7
 5.8
 0.4
 -1.2
 1.1
0.2
 5.7
4.4
 -0.2
-0.8
 -0.1
-0.1
 4.4
3.8
 -0.2
-0.7
 4.8
2.1
 -0.5
-0.6
 1.1
-0.9
 3.6
2.5
 4.5
1.9
 2.9
2.7
 1.6
-0.0
30 wsl6 white stripe leaf6 9271571 OSNPB_050567300 6.7 6.4
 7.0
 3.4
 -0.3
 3.9
 7.1
 3.0
1.3
 2.9
0.4
 3.0
0.7
 1.6
 2.0
 -0.4
 1.9
 2.2
 4.6
 2.7
 1.8
31 LOC4346938 Protein PLASTID REDOX INSENSITIVE 2, chloroplastic 4346938 OSNPB_090382400 6.7 6.0
 7.4
 3.4
 -0.1
 8.2
 6.3
 2.0
 1.4
 3.2
 2.5
 2.0
 0.7
 1.3
 5.0
 5.1
 4.9
 2.2
32 LOC4331442 50S ribosomal protein L11 4331442 Os03g0122200 6.7 6.4
 6.9
 1.2
 -1.3
 0.3
 4.3
 1.2
 -0.1
 4.0
 -0.2
 3.4
 0.6
 0.5
-0.3
 2.2
1.9
 2.9
2.8
 3.1
 0.9
33 LOC4333848 30S ribosomal protein S13, chloroplastic 4333848 Os03g0704000 6.7 6.3
 7.0
 0.3
 -1.0
 -0.1
 3.3
 0.1
-0.1
 -0.5
-1.0
 5.6
4.6
 -0.2
 2.5
 -1.2
 0.0
-0.0
 2.6
2.2
 2.0
1.9
 2.2
 1.1
34 LOC4331189 50S ribosomal protein L9, chloroplastic 4331189 Os02g0822600 6.6 6.4
 6.9
 0.9
 -0.2
 0.2
 5.8
 1.3
0.3
 1.1
0.1
 4.8
2.4
 -0.0
 3.2
 0.0
 -0.8
 1.5
 1.9
 3.6
 2.0
35 LOC4326614 DEAD-box ATP-dependent RNA helicase 25-like 4326614 OSNPB_010618400 6.6 4.2
 9.1
 2.9
2.9
 0.9
-0.7
 9.8
3.6
 7.8
2.1
 2.2
1.5
 2.8
2.0
 4.2
2.4
 5.8
 4.0
 0.9
 1.8
0.8
 2.5
2.0
 2.8
2.7
 5.2
3.6
 3.7
1.5
36 LOC4349608 elongation factor P 4349608 Os11g0116400 6.6 5.2
 8.0
 1.5
1.2
 -0.5
-0.8
 1.4
 5.7
 1.7
0.4
 1.5
1.2
 3.3
2.7
 1.2
 4.2
 0.8
 0.7
 2.5
 2.8
 5.2
 2.7
37 LOC4334632 transcription termination/antitermination protein NusG 4334632 Os03g0825500 6.6 5.3
 7.9
 3.2
 0.5
 1.8
 2.9
 1.7
 1.6
 3.1
 2.8
 2.2
 -1.0
 -0.8
 2.5
 3.3
 2.6
 2.3
38 LOC4346605 30S ribosomal protein 2, chloroplastic 4346605 Os09g0279500 6.5 6.0
 7.1
 2.0
 -0.8
 0.9
 5.0
 0.7
0.6
 0.7
0.4
 5.0
4.6


2.2
 4.0
 4.4
 4.7
 3.2
39 LOC4328965 chloroplast processing peptidase 4328965 Os02g0267000 6.4 6.1
 6.8
 3.3
 -0.5
 1.5
 3.9
 1.4
1.3
 1.7
1.0
 4.0
1.9
 0.4
 3.3
 0.9
 1.5
1.4
 3.5
2.2
 4.2
1.5
 2.7
 2.1
40 LOC4345271 ribonuclease E/G-like protein, chloroplastic 4345271 Os08g0323600 6.4 5.5
 7.3
 3.6
 -1.1
 1.6
 2.7
 2.5
2.2
 2.7
2.4
 2.0
1.2
 4.0
 3.1
 -0.8
 1.7
 0.4
 0.8
 2.6
 4.2
41 LOC4344860 pentatricopeptide repeat-containing protein At3g59040 4344860 Os08g0191900 6.4 6.7
 6.2
 3.1
 1.1
 2.2
 2.8
 2.4
2.4
 2.7
1.2
 3.0
2.6
 2.6
 5.6
 -1.2
 1.3
 1.7
 2.7
 1.0
 2.6
42 LOC4343349 methionine aminopeptidase 1B, chloroplastic 4343349 Os07g0510100 6.4 6.0
 6.9
 4.2
1.6
 -0.7
-1.0
 3.0
 3.9
 2.1
1.2
 2.2
1.8
 4.9
4.4
 1.2
 2.5
 0.6
 0.9
 0.8
 2.5
 2.1
 3.4
43 LOC4328236 50S ribosomal protein L3, chloroplastic 4328236 Os02g0137200 6.4 4.6
 8.1
 1.3
 -0.9
 1.3
 4.5
 -0.4
-0.4
 0.2
-0.9
 4.5
3.8
 -0.8
 5.5
 -0.5
 -0.6
 2.5
 4.4
 2.2
 0.2
44 LOC4330025 lysine--tRNA ligase, chloroplastic/mitochondrial 4330025 Os02g0623500 6.3 6.2
 6.4
 1.8
 -0.9
 3.2
 4.8
 1.7
 1.7
 5.7
 1.3
 2.8
 -1.0
 0.9
 3.0
 4.4
 2.6
 2.9
45 ASL1 Albino Seedling Lethal1 4325273 Os01g0678600 6.3 5.4
 7.1
 -0.2
 -0.8
 0.6
 5.6
 1.0
0.9
 0.3
-0.1
 4.7
4.6
 0.2
 2.5
 -0.7
 -0.5
 2.6
 2.3
 2.7
 1.1
46 LOC4337539 photosynthetic NDH subunit of lumenal location 5, chloroplastic 4337539 Os05g0103200 6.2 7.1
 5.4
 0.2
 -0.5
 1.7
 6.3
 0.7
0.3
 0.0
0.0
 4.5
3.4
 0.6
 6.4
 -0.7
 1.0
0.5
 4.9
3.0
 5.4
4.2
 5.9
 3.1
47 LOC4339922 superoxide dismutase [Fe] 1, chloroplastic-like 4339922 OSNPB_060115400 6.2 4.9
 7.5
 2.6
 0.7
 3.6
-0.2
 5.8
1.5
 2.5
0.8
 2.6
1.0
 3.4
2.8
 2.0
0.1
 4.0
2.9
 1.4
0.8
 0.6
-0.4
 2.8
1.3
 3.6
0.2
 2.2
 0.4
48 LOC4332348 50S ribosomal protein L4, chloroplastic 4332348 Os03g0265400 6.2 5.8
 6.6
 -0.5
 -0.3
 0.5
 5.3
 0.0
-0.1
 0.1
-1.7
 4.4
3.2
 -0.2
 5.4
 -1.0
 -1.0
 1.8
 2.9
 3.4
 2.1
49 LOC4346329 superoxide dismutase [Cu-Zn], chloroplastic-like 4346329 OSNPB_080561700 6.2 6.9
 5.4
 0.8
 -0.1
 -0.7
 0.7
 0.6
-0.4
 -0.0
-0.1
 3.9
2.5


0.3
-0.3
 0.8
0.7
 -0.3
-0.5
 1.9
 2.0
50 LOC4350988 GTPase Der 4350988 Os11g0638000 6.1 5.2
 7.1
 2.2
 -0.9
 4.5
 6.1
 1.8
 1.9
 5.0
 2.7
 2.0
 -2.0
 0.5
 3.5
 3.7
 2.6
 2.3
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