Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4352058   serine hydroxymethyltransferase 4 
 osa-r.5   4352058   serine hydroxymethyltransferase 4 
 osa-m.8   4352058   serine hydroxymethyltransferase 4 
 osa-u.4   4350456   serine hydroxymethyltransferase 4 
 ath-u.4   SHM4   serine hydroxymethyltransferase 4 
 ath-u.4   EDA36   Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 
 gma-u.4   100815417   serine hydroxylmethyltransferase 
 gma-u.4   SHMT   serine hydroxylmethyltransferase 
 sly-u.4   101259725   serine hydroxymethyltransferase 4 
 sly-u.4   101256090   serine hydroxymethyltransferase 4 
 ppo-u.4   7461640   serine hydroxymethyltransferase 4 
 ppo-u.4   18107098   serine hydroxymethyltransferase 4 
 mtr-u.4   11415840   serine hydroxymethyltransferase 4 
 mtr-u.4   11442479   serine hydroxymethyltransferase 4 

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Top 50 coexpressed genes to 4352058 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa1230   Biosynthesis of amino acids  10 219 10.57
 osa230   Purine metabolism  7 90 9.11
 osa3010   Ribosome  5 336 3.16
 osa1210   2-Oxocarboxylic acid metabolism  4 53 5.33
 osa220   Arginine biosynthesis  3 34 4.30

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osa:LOC4352058 (serine hydroxymethyltransferase 4) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4352058
osa-r.5
for
4352058
osa-m.8
for
4352058
osa-u.4
for
4350456
ath-u.4
for
SHM4
ath-u.4
for
EDA36
gma-u.4
for
100815417
gma-u.4
for
SHMT
sly-u.4
for
101259725
sly-u.4
for
101256090
ppo-u.4
for
7461640
ppo-u.4
for
18107098
mtr-u.4
for
11415840
mtr-u.4
for
11442479
1 LOC4325739 uridine 5'-monophosphate synthase-like 4325739 OSNPB_010951200 5.9 5.9
 6.0
 1.2
-0.3
 2.8
 0.4
 1.9
-0.5
 2.0
-0.7
 1.5
 1.0
 1.8
0.1
 1.2
-0.1
 2.1
0.5
 1.0
0.5
2 LOC4327045 pentatricopeptide repeat-containing protein At1g55890, mitochondrial 4327045 Os01g0785700 5.6 4.8
 6.5
 0.5









3 LOC4344854 phosphoribosylamine--glycine ligase 4344854 Os08g0191200 5.4 4.6
 6.1
 0.4
-0.5
 1.1
 1.6
 1.4
 0.0
 -0.1
 0.7
 0.6
0.5
 0.9
0.5

4 LOC4349523 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 4349523 Os10g0580800 5.3 5.3
 5.4
 0.9
 0.0
 0.1
 1.3
1.0
 2.2
1.5
 1.7
 1.3
 0.5
 0.1
 2.1
 1.1
5 LOC4345281 GMP synthase [glutamine-hydrolyzing] 4345281 Os08g0326600 5.3 4.9
 5.8
 0.9
 1.0
 0.4
 0.2
-0.0
 0.9
0.6
 0.6
 0.3
 0.7
 0.7
 -0.0
 1.1
6 LOC4347529 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial 4347529 Os09g0509000 5.1 6.0
 4.3
 1.2
0.6
 0.1
 -0.7
 2.6
-0.3
 2.0
0.9
 -0.6
-0.8
 -0.5
-0.6
 -0.8
-1.4
 -0.1
-0.1
 0.8
0.4
 1.5
-0.3
7 LOC4332563 probable LL-diaminopimelate aminotransferase, chloroplastic 4332563 OSNPB_030299900 5.1 4.9
 5.2
 0.1
 1.2
-0.6
 2.6
0.3
 1.1
0.5
 0.9
0.5
 0.9
-1.0
 1.2
-0.3
 1.2
0.7
 1.1
0.5
 1.3
0.2
 0.6
0.1
8 LOC4333613 3-isopropylmalate dehydrogenase 2, chloroplastic 4333613 Os03g0655700 5.0 3.5
 6.5
 -0.8
 1.7
1.4
 0.8
0.4
 0.6
0.5
 0.7
0.1
 1.0
 1.2
 0.5
 -0.2
 0.8
 1.2
9 LOC9272292 50S ribosomal protein L25 9272292 Os03g0612600 5.0 5.4
 4.6
 0.8
 -0.4
 0.5
 -1.2
 -2.9
 -0.7
 0.3
 1.4
-0.0
 0.6
0.5
 0.5
 -0.6
10 LOC4329211 T-complex protein 1 subunit delta 4329211 Os02g0332200 4.9 5.9
 3.9
 2.0
 3.6
 1.2
 4.0
3.2
 3.7
2.6
 -0.8
 -0.9
 1.0
0.6
 0.7
-0.7
 1.4
 3.0
11 LOC4344931 bifunctional purine biosynthesis protein PurH 4344931 Os08g0206600 4.8 4.7
 4.9
 -0.3
 0.9
 0.2
 1.3
0.1
 1.3
0.1
 -0.3
 0.3
 -0.7
 0.3
 0.0
-0.4
 -0.3
-1.8
12 LOC4324899 probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial 4324899 Os01g0888500 4.7 5.1
 4.4
 1.3
0.2
 0.7
 0.4
 1.7
1.1
 0.6
-0.2
 -0.1
 -0.4
 0.6
0.5
 1.4
0.3
 0.1
-0.3
 0.5
-0.2
13 LOC4336590 acetylglutamate kinase 4336590 Os04g0550500 4.7 3.8
 5.5
 2.5
1.9
 0.2
 0.2
 2.8
1.2
 4.5
0.6
 2.3
 3.3
 -0.5
-0.7
 1.0
0.9
 1.2
 2.3
14 LOC4329234 probable diaminopimelate decarboxylase, chloroplastic 4329234 OSNPB_020440000 4.6 4.0
 5.2
 -0.6
 1.0
0.7
 0.4
-0.6
 1.5
0.6
 -0.1
-0.3
 2.0
 3.2
 1.1
0.2
 0.9
0.0
 0.1
 0.4
15 LOC4325217 uncharacterized LOC4325217 4325217 Os01g0148700 4.6 6.3
 3.0
 1.6









16 LOC4330192 3-isopropylmalate dehydratase small subunit 3 4330192 Os02g0655300 4.6 4.6
 4.6
 0.8
 1.2
0.2
 0.6
0.2
 1.5
1.4
 2.3
1.4
 -0.2
 -0.7
 0.8
 0.7
 2.4
 2.2
17 LOC4331792 adenylosuccinate synthetase 1, chloroplastic-like 4331792 OSNPB_030174500 4.5 4.0
 5.0
 0.7
-0.9
 1.7
 0.6
 1.2
0.8
 0.9
0.7
 0.3
-1.0
 0.6
-1.2
 2.7
 0.8
 1.6
 0.2
18 LOC4351847 argininosuccinate synthase, chloroplastic 4351847 Os12g0235800 4.5 4.5
 4.5
 2.4
 3.5
 0.1
 1.5
1.4
 1.6
1.1
 1.9
 1.5
 1.1
0.8
 1.9
0.2
 1.0
-0.3
 1.1
-0.7
19 LOC4336070 prohibitin-3, mitochondrial 4336070 Os04g0462900 4.5 4.9
 4.0
 2.7
-0.3
 0.8
-0.8
 0.5
-0.1
 2.5
2.0
 2.8
1.7
 0.4
-0.0
 1.0
0.3
 1.4
0.7
 1.3
-0.5
 1.7
0.3
 2.0
0.6
20 LOC4334308 inosine-5'-monophosphate dehydrogenase 4334308 Os03g0780500 4.4 4.7
 4.2
 3.6
 2.6
0.8
 1.0
0.5
 -0.2
-0.3
 -1.4
-2.1
 -0.3
 -0.5
 0.4
-0.2
 0.8
0.1
 0.4
 0.9
21 LOC4348309 glycine-rich RNA-binding protein 10 4348309 Os10g0322032 4.4 4.6
 4.2
 0.9
0.6
 0.3
0.2
 0.4
0.2
 1.4
0.5
 1.5
0.8
 0.7
0.3
 1.9
1.0
 0.5
0.3
 1.1
0.3
 1.2
0.2
 0.3
0.2
22 LOC4325084 DNA repair RAD52-like protein 1, mitochondrial 4325084 4.4 3.6
 5.2
 1.7
 -2.0
 -1.3
 -0.8
 1.2
 0.3
 -0.2
 -1.4
 -1.0
 -0.8
 -1.6
23 LOC4342149 coiled-coil domain-containing protein 12 4342149 Os06g0730800 4.3 3.7
 4.9
 0.8
 -1.8
 -0.8
 0.0
-1.1
 0.5
-0.0
 -1.3
 1.2
 -1.2
 -0.6
 1.1
 1.2
24 LOC4339521 threonine synthase, chloroplastic 4339521 Os05g0549700 4.3 5.1
 3.4
 3.7
1.1
 2.1
1.0
 0.5
-0.3
 3.5
2.0
 3.6
2.0
 3.0
0.1
 4.8
2.1
 1.6
1.6
 0.6
0.2
 1.5
0.5
 2.0
1.6
25 LOC4332596 argininosuccinate lyase, chloroplastic 4332596 Os03g0305500 4.2 3.6
 4.8
 0.7
 1.2
 -0.3
 2.5
0.1
 3.3
0.2
 0.9
 0.8
 -1.3
 -1.1
 -0.5
 0.2
26 LOC4336449 ATP-dependent Clp protease proteolytic subunit 4336449 Os04g0525600 4.2 4.1
 4.3
 1.3
 0.7
 0.5
 2.2
1.1
 2.1
1.4
 1.1
 2.2
 0.2
-0.9
 -0.2
-0.2
 2.6
 3.6
27 LOC4345238 50S ribosomal protein L15 4345238 Os08g0310100 4.2 4.1
 4.4
 1.8
 0.3
 -0.9
 1.3
1.3
 1.4
0.8
 0.3
 1.8
 0.0
-0.0
 -0.0
-0.4
 0.3
0.3
 0.6
0.3
28 LOC4330736 uncharacterized LOC4330736 4330736 Os02g0749900 4.2 4.2
 4.2
 1.5
1.3



1.4
0.8
 1.5
1.4



29 LOC4349477 60S ribosomal export protein NMD3 4349477 Os10g0573900 4.2 3.7
 4.6
 2.1
 0.7
 0.0
 2.7
2.2
 1.3
0.2
 -1.2
 0.2
 -1.0
 -0.8
 -0.5
 0.8
30 LOC4338500 ERBB-3 BINDING PROTEIN 1 4338500 Os05g0350500 4.2 4.3
 4.0
 1.8
 2.6
 1.1
 3.3
2.9
 3.6
2.9
 1.0
-0.6
 3.6
0.1
 -0.5
-2.0
 -0.6
-1.2
 1.2
-0.5
 1.2
-1.3
31 LOC4339677 ketol-acid reductoisomerase, chloroplastic-like 4339677 OSNPB_050573700 4.2 3.6
 4.7
 2.0
-0.7
 1.0
 0.7
 0.4
0.2
 0.9
0.2
 -0.2
-1.4
 1.1
-1.7
 -0.0
-1.1
 0.2
-0.1
 -0.1
 -0.9
32 LOC4331810 elongation factor 1-alpha-like 4331810 OSNPB_030177400 4.1 5.8
2.9
2.5
 2.9
2.7
 1.4
1.3
 2.8
2.3
 2.7
2.2
 -0.3
-0.3
 2.8
2.7
 3.0
2.4
 2.4
2.3
 0.3
-0.6
 1.4
-0.4
33 LOC4337361 protein DJ-1 homolog D 4337361 Os04g0671700 4.1 5.0
 3.2
 1.1
 1.3
 1.0
 0.4
 1.5
 0.2
 0.8
 0.1
-0.6
 -0.1
-0.1
 0.3
 -0.0
34 LOC4352558 diaminopimelate epimerase, chloroplastic-like 4352558 4.1 3.1
 5.1
 2.1
 0.3
 0.5
 1.1
1.1
 1.2
-0.4
 0.0
 0.3
 -0.1
-0.9
 -0.7
-1.2
 0.5
 1.0
35 LOC4339634 eukaryotic translation initiation factor 3 subunit D 4339634 Os05g0566500 4.1 4.6
 3.6
 3.1
 3.8
2.0
 0.8
0.5
 3.9
3.1
 3.7
3.5
 -0.7
 0.3
 1.4
1.2
 1.8
1.6
 1.4
 2.6
36 LOC4347318 phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic 4347318 Os09g0467100 4.1 2.5
 5.7
 0.1
 1.3
 0.2
 1.6
0.7
 0.7
0.4
 -0.2
 -1.6
 -0.0
 -0.4
 0.5
 -0.2
37 LOC4342771 40S ribosomal protein S12 4342771 Os07g0229900 4.1 4.6
 3.5
 1.4
0.6
 2.2
0.4
 1.3
0.7
 1.2
0.8
 1.0
0.8
 0.5
-0.1
 2.2
2.1
 0.9
0.2
 1.8
0.8
 0.9
0.4
 1.2
1.0
38 LOC4343020 uncharacterized LOC4343020 4343020 Os07g0415200 4.1 3.4
 4.7
 1.3
 1.0
 -0.3
 3.2
-1.0
 2.6
-1.4
 0.3
 0.1
 0.6
 0.7
 1.3
 1.1
39 LOC4339782 RGG repeats nuclear RNA binding protein A 4339782 Os05g0589600 4.0 4.1
 4.0
 3.2
1.9
 1.4
-0.2
 0.7
-0.6
 2.0
1.7
 1.6
1.6
 0.4
0.1
 1.2
0.7
 0.9
0.8
 1.1
0.3
 1.0
0.6
 1.9
1.4
40 LOC4347204 formate--tetrahydrofolate ligase 4347204 Os09g0446800 4.0 4.8
 3.2
 1.9
 -0.2
 -1.4
 1.8
1.1
 0.7
-1.3
 0.5
 0.4
 -0.2
-1.0
 -0.7
-0.7
 -0.6
 1.1
41 LOC4328187 upstream activation factor subunit spp27 4328187 Os02g0130000 4.0 3.9
 4.1
 0.7
0.2
 0.6
0.0
 0.7
0.0
 0.8
0.7
 0.6
0.5
 1.6
0.2
 1.9
1.8
 0.6
0.5
 0.3
-0.0
 0.0
-0.8
 -0.9
-1.1
42 LOC4334583 leucine aminopeptidase-like 4334583 OSNPB_030819100 4.0 4.0
 4.0
 2.7
 0.6
 0.2
 1.4
 0.0
 2.1
 1.8
 -0.3
-2.0
 -0.4
-0.5
 2.2
 2.0
43 LOC4332854 acyl carrier protein 2, mitochondrial 4332854 Os03g0353333 4.0 4.2
 3.7
 2.0
1.2
 1.0
 0.0
 0.7
0.2
 1.1
0.5
 0.0
-0.1
 0.8
0.1
 1.4
1.0
 0.6
0.6
 1.1
 1.2
44 LOC4338033 probable tRNA N6-adenosine threonylcarbamoyltransferase 4338033 Os05g0194600 3.9 3.9
 4.0
 0.5
 -0.6
 -0.6
 -0.4
-1.0
 -0.4
-0.9
 -1.4
 -1.2
 1.1
 0.4
 0.5
 0.7
45 LOC4334044 telomerase Cajal body protein 1 4334044 Os03g0738000 3.9 3.3
 4.5
 -1.2
 -1.7
 -0.5
 0.6
 -0.4
 -0.5
 -0.9
 -0.6
 -0.6
 -0.6
 0.2
46 LOC4331875 protein EMBRYO DEFECTIVE 514 4331875 Os03g0187000 3.9 3.9
 3.9
 1.3
 1.1
 0.9
 -0.0
-0.2
 0.3
-0.2
 1.0
-2.2
 1.2
-2.3
 -0.8
-0.9
 0.4
-0.1
 0.0
-0.5
 0.2
-0.7
47 LOC4343870 probable small nuclear ribonucleoprotein G 4343870 Os07g0608700 3.9 4.3
 3.4
 0.3
-0.5
 -0.3
-0.6
 -0.2
-0.2
 0.4
-0.3
 0.1
-0.1
 -0.1
-0.2
 2.1
0.9
 -0.1
-1.1
 -0.5
-0.9
 -0.1
-0.5
 0.3
-1.6
48 LOC4346844 histidine protein methyltransferase 1 homolog 4346844 Os09g0359900 3.9 3.5
 4.3
 0.5
 0.3
 -0.6
 -0.6
 -0.1
 -0.3
 -1.7
 -1.2
 -0.8
 0.0
 0.3
49 LOC4348843 54S ribosomal protein L19, mitochondrial 4348843 Os10g0466200 3.9 3.6
 4.1
 1.1
 0.1
 -1.3
 1.0
0.1
 0.7
0.2
 0.1
 0.6
 0.4
 0.6
 0.7
 0.3
50 LOC4324115 guanine nucleotide-binding protein subunit beta-like protein A 4324115 OSNPB_010686800 3.8 4.0
 3.7
 3.8
1.8
 4.2
3.6
 1.3
1.3
 4.3
3.8
 3.0
2.9
 1.1
0.1
 3.9
1.7
 1.3
1.0
 1.0
0.1
 1.6
 2.6
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