Orthologous genes in OrthoFinder**

Species Gene Description
 osa-u.4   4352085   photosystem I reaction center subunit XI, chloroplastic 
 osa-r.5   4352085   photosystem I reaction center subunit XI, chloroplastic 
 osa-m.8   4352085   photosystem I reaction center subunit XI, chloroplastic 
 ath-u.4   PSAL   photosystem I subunit l 
 gma-u.4   100527240   uncharacterized LOC100527240 
 gma-u.4   100500317   uncharacterized LOC100500317 
 sly-u.4   101265555   photosystem I reaction center subunit XI, chloroplastic 
 sly-u.4   101265249   photosystem I reaction center subunit XI, chloroplastic 
 ppo-u.4   7471126   photosystem I reaction center subunit XI, chloroplastic 
 ppo-u.4   7463368   photosystem I reaction center subunit XI, chloroplastic 
 mtr-u.4   11408159   photosystem I reaction center subunit XI, chloroplastic 

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Top 50 coexpressed genes to 4352085 (osa-u.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)
 osa195   Photosynthesis  14 75 23.63
 osa196   Photosynthesis - antenna proteins  10 15 23.71
 osa860   Porphyrin metabolism  4 42 5.74
 osa900   Terpenoid backbone biosynthesis  2 52 2.27
 osa10   Glycolysis / Gluconeogenesis  1 143 -

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osa:LOC4352085 (photosystem I reaction center subunit XI, chloroplastic) External Links;


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Show Coexpressed Genes
CoexMap
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-u.4
for
4352085
osa-r.5
for
4352085
osa-m.8
for
4352085
ath-u.4
for
PSAL
gma-u.4
for
100527240
gma-u.4
for
100500317
sly-u.4
for
101265555
sly-u.4
for
101265249
ppo-u.4
for
7471126
ppo-u.4
for
7463368
mtr-u.4
for
11408159
1 LOC4343709 photosystem I chlorophyll a/b-binding protein 2, chloroplastic 4343709 Os07g0577600 9.6 8.2
 10.9
 17.9
 8.8
6.8
 11.7
10.7
 11.5
 10.2
 1.7
1.6
 8.7
7.6
 5.3
2 LOC4343583 chlorophyll a-b binding protein CP29.1, chloroplastic 4343583 Os07g0558400 6.4 8.8
 3.9
 16.3
11.8
 8.0
6.7
 11.9
10.4
 10.5
 9.3
 2.9
2.8
 9.9
8.8
 6.4
5.0
3 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 6.1 9.3
 2.8
 16.8
 8.4
 15.3
 11.4
10.0
 10.8
8.8
 2.6
 11.6
 4.6
4 LOC9269218 uncharacterized LOC9269218 9269218 Os07g0673550 6.1 9.5
13.4
 7.9
6.2
 16.6
10.6
 9.9
7.7
 11.5
10.7
 3.2
2.2
 8.9
6.4
 4.7
4.2
5 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 5.8 8.1
 3.4
 21.3
 6.8
6.5
 14.3
8.3
 11.9
 10.8
 2.9
0.5
 6.9
5.3
 5.2
6 LOC4349004 protochlorophyllide reductase B, chloroplastic-like 4349004 OSNPB_100496900 5.7 6.8
 4.5
 5.2
4.0
 6.2
6.0
 9.8
3.2
 6.8
6.2
 5.5
4.5
 1.7
1.6
 7.8
4.6
 4.3
7 LOC4340892 chlorophyll a-b binding protein 1B-21, chloroplastic 4340892 Os06g0320500 5.5 6.5
 4.6
 16.7
 6.4
6.2
 12.1
5.6
 8.3
7.0
 9.6
7.1
 2.4
0.8
 11.1
1.7
 2.7
8 LOC4346326 photosystem I reaction center subunit II, chloroplastic 4346326 Os08g0560900 5.5 8.7
16.5
10.0
 11.3
8.3
 16.5
15.4
 12.5
 11.0
 3.2
2.5
 12.1
11.3
 6.2
9 LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like 4339593 OSNPB_050560000 5.4 7.6
 3.2
 19.4
15.1
 7.4
6.5
 10.4
8.5
 8.4
6.4
 8.0
6.6
 3.6
 13.3
 9.1
10 LOC4343515 oxygen-evolving enhancer protein 3, chloroplastic-like 4343515 OSNPB_070544800 5.3 8.1
 2.6
 18.0
12.7
 8.8
7.4
 8.2
6.2
 11.8
 18.4
 2.6
2.3
 9.5
8.7
 8.6
11 LOC4329783 photosystem II 5 kDa protein, chloroplastic 4329783 Os02g0581100 5.2 6.2
 4.2
 15.1
 6.0
3.8
 6.2
6.1
 1.0
 1.1
 1.4
0.8
 7.2
3.3
 8.3
6.9
12 LOC9266204 nuclear transcription factor Y subunit C-2-like 9266204 OSNPB_030251350 5.2 5.3
 5.1
 1.3
1.1
 1.0
0.7
 2.7
1.5
 4.9
1.3
 2.9
1.7
 0.3
0.2
 1.4
1.1
 3.0
0.4
13 LOC4342404 photosystem I reaction center subunit psaK, chloroplastic 4342404 Os07g0148900 5.1 7.1
 3.2
 16.2
 8.6
7.2
 8.7
6.9
 11.9
 12.1
 0.9
-0.0
 10.0
5.8
 3.9
14 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 5.1 6.5
 3.7
 9.2
 5.4
5.1
 7.6
7.2
 4.4
 3.3
 2.0
1.7
 6.8
3.0
 3.3
15 LOC4330625 protein CURVATURE THYLAKOID 1A, chloroplastic 4330625 Os02g0731600 5.0 4.7
 5.4
 8.6
 7.4
5.6
 12.6
8.4
 7.4
3.1
 6.0
2.0
 1.9
1.5
 8.6
5.0
 5.5
16 LOC4344539 photosystem II core complex proteins psbY, chloroplastic 4344539 Os08g0119800 5.0 7.6
 2.4
 14.5
 6.3
5.0
 12.9
8.4
 6.8
 5.3
 1.4
1.4
 7.5
7.3
 10.8
3.0
17 LOC4348209 uncharacterized LOC4348209 4348209 Os10g0181600 5.0 4.5
 5.5
3.7
3.4
 4.5
3.7
 5.1
 3.5
 0.0
 0.1
 5.4
18 LOC4346604 rhodanese-like domain-containing protein 9, chloroplastic 4346604 Os09g0279400 4.9 4.8
 5.0
 7.8
 4.2
3.6
 7.2
5.1
 7.6
 5.1
 0.9
 1.7
 7.0
19 LOC4330711 geranylgeranyl diphosphate reductase, chloroplastic-like 4330711 OSNPB_020744900 4.9 6.0
 3.8
 6.5
 5.7
3.9
 6.1
6.0
 5.1
0.5
 5.2
-0.3
 1.3
1.1
 5.3
4.4
 3.4
-0.4
20 LOC4330408 pentatricopeptide repeat-containing protein At1g31920 4330408 Os02g0697500 4.9 5.3
 4.5
3.7
3.7
 5.6
3.3
 4.4
 3.0
 0.4
 2.6
 4.5
21 LOC4332805 uncharacterized LOC4332805 4332805 Os03g0343900 4.9 6.9
 2.8







22 LOC4347395 photosystem I reaction center subunit V, chloroplastic 4347395 Os09g0481200 4.7 7.2
 2.2
 17.2
 6.8
6.7
 13.0
7.3
 9.3
 10.8
 2.4
1.6
 9.2
7.9
 5.8
23 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 4.7 5.5
 3.9
 13.1
 8.4
7.2
 10.1
9.6
 6.4
5.3
 7.2
3.0
 2.0
 7.1
 3.8
24 LOC4351694 photosystem I reaction center subunit N, chloroplastic 4351694 Os12g0189400 4.7 6.2
 3.1
 11.9
 7.1
4.6
 9.3
7.9
 8.0
 8.6
 1.7
1.3
 7.9
5.3
 7.3
25 LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 4.6 6.2
 3.1
 13.5
10.8
 6.2
6.1
 9.9
7.8
 7.2
6.2
 7.5
7.1
 3.6
3.6
 9.6
8.9
 7.3
6.5
26 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 4.6 7.3
 1.9
 17.7
 6.8
6.4
 13.3
9.0
 9.5
 10.5
 2.0
1.8
 11.8
11.2
 7.0
6.3
27 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 4.5 7.2
 1.8
 17.3
9.3
 8.2
7.8
 10.7
10.0
 11.6
 14.2
 3.1
2.2
 11.4
10.7
 7.4
7.0
28 LOC4332887 transcription termination factor MTEF1, chloroplastic 4332887 Os03g0360600 4.5 3.7
 5.3
 0.4
 3.9
3.4
 5.0
4.0
 1.1
 1.0
 0.1
 1.3
 1.5
29 LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like 4332690 OSNPB_030323200 4.5 5.0
 3.9
 6.0
 4.4
4.1
 5.0
4.9
 4.1
 1.6
 1.1
 3.3
 1.2
30 LOC4347935 protein TIC 62, chloroplastic-like 4347935 Os10g0100300 4.5 6.2
 2.7
 4.4
 3.5
2.2
 4.2
3.2
 3.8
 4.5
 1.3
0.8
 2.8
1.0
 1.8
31 LOC4352606 uncharacterized LOC4352606 4352606 Os12g0575000 4.4 5.8
 3.1
 3.9
 3.7
3.5
 4.8
3.8
 5.8
 3.6
 0.5
 4.1
 3.8
32 LOC4328623 chlorophyll a-b binding protein 8, chloroplastic 4328623 Os02g0197600 4.4 6.5
 2.4
 18.4
 8.9
8.1
 15.3
11.9
 11.1
4.6
 12.4
4.2
 0.9
 10.5
 6.5
33 LOC4338768 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like 4338768 OSNPB_050408900 4.4 3.9
 4.9
 3.5
-0.1
 4.2
3.8
 4.1
3.6
 4.5
-0.0
 0.7
-0.3
 0.4
0.2
 1.9
0.7
 1.5
0.7
34 LOC4326901 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic 4326901 Os01g0279100 4.4 3.6
 5.2
 9.4
 5.8
5.5
 8.2
6.9
 6.4
 5.7
 2.2
 6.2
 4.2
35 LOC4324196 lycopene epsilon cyclase, chloroplastic 4324196 Os01g0581300 4.4 3.8
 5.0
 0.6
 3.6
2.6
 3.3
2.2

0.8
 1.6
 3.3
36 LOC4349897 fructose-bisphosphate aldolase, chloroplastic-like 4349897 OSNPB_110171300 4.2 4.4
 4.0
 8.0
4.5
 2.9
2.7
 5.0
3.8
 7.2
5.0
 5.5
5.3
 1.4
0.5
 5.0
2.9
 3.2
2.3
37 LOC4325097 uncharacterized LOC4325097 4325097 Os01g0896500 4.2 5.6
 2.8
 4.2
 3.4
1.6
 3.7
2.8
 2.7
 0.6
 0.5
 1.7
 0.6
38 LOC4331128 uncharacterized LOC4331128 4331128 Os02g0815300 4.2 4.5
 3.9
2.4
2.1
 3.0
3.0
 3.6
 2.2
 0.2
 2.9
 1.3
39 LOC4327654 uncharacterized LOC4327654 4327654 Os01g0585300 4.2 4.8
 3.5
 6.3
 4.6
4.4
 6.2
5.4
 7.0
 6.0
 2.1
1.4
 4.9
4.7
 3.2
40 LOC4330608 calcium sensing receptor, chloroplastic 4330608 Os02g0729400 4.1 5.3
 2.9
 4.4
 3.0
1.5
 4.2
1.2
 4.0
 1.9
 -0.6
 2.7
 2.7
1.4
41 LOC4333882 zinc finger protein CONSTANS-LIKE 16 4333882 Os03g0711100 4.1 4.6
 3.6







42 LOC4324705 chlorophyll a-b binding protein of LHCII type 1 4324705 Os01g0720500 4.1 5.4
 2.7
 13.5
10.8
 6.2
6.1
 9.9
7.8
 7.2
6.2
 7.5
7.1
 3.6
3.6
 9.6
8.9
 7.3
6.5
43 LOC4343070 photosystem I reaction center subunit IV, chloroplastic 4343070 Os07g0435300 4.0 4.6
 3.5
 19.5
14.7
 10.6
9.0
 18.6
12.9
 10.5
9.5
 9.1
6.4
 1.8
 13.8
 9.0
6.3
44 LOC4338302 protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic 4338302 Os05g0291700 4.0 6.3
 1.8
 10.6
 5.8
4.3
 8.7
7.7
 7.0
 5.9
 1.7
0.9
 6.8
3.2
 5.1
45 LOC4331129 uncharacterized LOC4331129 4331129 Os02g0815400 4.0 5.0
 3.1
 4.2
 2.2
 3.6
 1.5
 0.8
 1.9
 0.3
 0.7
46 LOC4336028 chlorophyll a-b binding protein CP24, chloroplastic 4336028 Os04g0457000 4.0 5.3
 2.7
 15.9
 7.5
7.3
 10.5
8.7
 7.4
7.2
 7.1
6.9
 1.9
1.5
 9.4
8.5
 6.2
47 LOC4340704 protein CURVATURE THYLAKOID 1A, chloroplastic 4340704 Os06g0264800 4.0 5.5
 2.5
 8.6
 7.4
5.6
 12.6
8.4
 7.4
3.1
 6.0
2.0
 1.9
1.5
 8.6
5.0
 5.5
48 LOC4350176 chlorophyll a-b binding protein CP26, chloroplastic 4350176 Os11g0242800 4.0 3.6
 4.3
 16.9
 6.4
6.3
 10.7
6.8
 11.1
 11.2
 2.7
2.5
 6.6
6.4
 3.8
49 LOC9270776 ATP synthase delta chain, chloroplastic 9270776 Os02g0750100 3.9 6.1
6.5
 5.9
5.6
 8.6
7.4
 6.7
 6.4
 2.4
1.6
 4.4
1.0
 3.0
50 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 3.9 4.9
 3.0
 14.7
 6.5
6.1
 9.6
7.1
 6.9
5.9
 6.5
6.2
 3.0
 6.4
 6.1
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