ATTED-II : GeneID search result

[←][→] ath AT2G03710 Gene

functional annotation

Function

K-box region and MADS-box transcription factor family protein

GO BP

GO:0048442 [list] [network] sepal development	(8 genes)	IMP
GO:0010076 [list] [network] maintenance of floral meristem identity	(9 genes)	IMP
GO:0048441 [list] [network] petal development	(20 genes)	IMP
GO:0048481 [list] [network] plant ovule development	(57 genes)	IBA
GO:0048440 [list] [network] carpel development	(79 genes)	IMP
GO:0048443 [list] [network] stamen development	(101 genes)	IMP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II	(206 genes)	IEA
GO:0030154 [list] [network] cell differentiation	(695 genes)	IEA
GO:0007275 [list] [network] multicellular organism development	(2714 genes)	IBA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA ISM

GO MF

GO:0000977 [list] [network] RNA polymerase II regulatory region sequence-specific DNA binding	(152 genes)	IBA
GO:0008134 [list] [network] transcription factor binding	(173 genes)	IBA
GO:0046983 [list] [network] protein dimerization activity	(570 genes)	IEA
GO:0043565 [list] [network] sequence-specific DNA binding	(796 genes)	IBA
GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IBA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	ISS
GO:0003677 [list] [network] DNA binding	(2280 genes)	TAS
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_178466.1 NP_849930.1 NP_973411.1

BLAST

NP_178466.1 NP_849930.1 NP_973411.1

Orthologous

[Ortholog page] LOC542043 (zma) LOC542506 (zma) RIN (sly) TM29 (sly) MADS1 (sly) LOC543885 (sly) MADS28 (gma) SEP1 (gma) MADS-RIN-MADS-MC (sly) SEP2 (ath) SEP1 (ath) SEP3 (ath) LOC4346134 (osa) LOC4347517 (osa) LOC7460556 (ppo) LOC7498222 (ppo) LOC11425103 (mtr) LOC11427564 (mtr) LOC11442092 (mtr) LOC11446395 (mtr) LOC25493906 (mtr) LOC25495434 (mtr) MADS2 (vvi) MADS4 (vvi) LOC100232936 (vvi) LOC100251943 (vvi) LOC100415938 (zma) LOC100778931 (gma) LOC100785322 (gma) LOC100786066 (gma) LOC100788427 (gma) LOC100794429 (gma) LOC100797819 (gma) LOC100804810 (gma) LOC100805078 (gma) LOC100811049 (gma) LOC100813520 (gma) CMB1 (sly) LOC101263981 (sly) LOC103829078 (bra) LOC103835412 (bra) LOC103839053 (bra) LOC103842962 (bra) LOC103846385 (bra) LOC103853937 (bra) LOC103856162 (bra) LOC103870919 (bra) LOC103875390 (bra)

Subcellular
localization
wolf

nucl 10	(predict for NP_178466.1)
nucl 10	(predict for NP_849930.1)
nucl 10	(predict for NP_973411.1)

Subcellular
localization
TargetP

other 8, mito 3	(predict for NP_178466.1)
other 8, mito 3	(predict for NP_849930.1)
other 8, mito 3	(predict for NP_973411.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with SEP4 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.3	AGL8	AGAMOUS-like 8	[detail]	836212
4.0	AT1G67865	hypothetical protein	[detail]	28717407
4.0	AGL20	AGAMOUS-like 20	[detail]	819174

Coexpressed
gene list

[Coexpressed gene list for SEP4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

264041_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

264041_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

264041_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	814898
Refseq ID (protein)	NP_178466.1
	NP_849930.1
	NP_973411.1

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