[←][→] ath   AT2G06530 Gene
functional annotation
Function   SNF7 family protein  
GO BP
GO:0070676 [list] [network] intralumenal vesicle formation  (5 genes)  IDA  
GO:0032509 [list] [network] endosome transport via multivesicular body sorting pathway  (18 genes)  IBA  
GO:0045324 [list] [network] late endosome to vacuole transport  (27 genes)  IBA  
GO:0016192 [list] [network] vesicle-mediated transport  (417 genes)  ISS  
GO:0015031 [list] [network] protein transport  (724 genes)  IBA IMP  
GO CC
GO:0000815 [list] [network] ESCRT III complex  (11 genes)  IBA ISS  
GO:0005771 [list] [network] multivesicular body  (20 genes)  IBA IDA  
GO:0005770 [list] [network] late endosome  (91 genes)  IDA  
GO:0010008 [list] [network] endosome membrane  (162 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04144 [list] [network] Endocytosis (144 genes)
Protein NP_001324346.1  NP_565336.1 
BLAST NP_001324346.1  NP_565336.1 
Orthologous [Ortholog page] LOC4342791 (osa)  LOC4351205 (osa)  LOC7478111 (ppo)  LOC25486474 (mtr)  LOC25500541 (mtr)  LOC100193992 (zma)  LOC100255989 (vvi)  LOC100284688 (zma)  LOC100526885 (gma)  LOC100791887 (gma)  LOC100819241 (gma)  LOC101247586 (sly)  LOC103647208 (zma)  LOC103860351 (bra) 
Subcellular
localization
wolf
cyto_nucl 5,  cyto 4,  nucl 3,  cysk_nucl 2,  cyto_pero 2,  cyto_E.R. 2  (predict for NP_001324346.1)
cyto 3,  mito 3,  chlo 2,  mito_plas 2,  cyto_plas 2  (predict for NP_565336.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001324346.1)
other 8,  mito 3  (predict for NP_565336.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04626 Plant-pathogen interaction 2
Genes directly connected with VPS2.1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 GILP GSH-induced LITAF domain protein [detail] 831158
7.5 I-2 phosphoprotein phosphatase inhibitor [detail] 835296
7.3 AT5G11680 classical AGP protein [detail] 831040
7.2 VPS60.1 SNF7 family protein [detail] 820233
6.9 AT3G58600 Adaptin ear-binding coat-associated protein 1 NECAP-1 [detail] 825029
6.8 SNF7.1 SNF7 family protein [detail] 829037
6.8 AT1G25682 coiled-coil protein (DUF572) [detail] 839146
6.6 GBF4 G-box binding factor 4 [detail] 839356
6.5 CPK4 calcium-dependent protein kinase 4 [detail] 826541
6.0 SYP42 syntaxin of plants 42 [detail] 827505
5.8 PBS1 Protein kinase superfamily protein [detail] 831155
5.1 AT3G53990 Adenine nucleotide alpha hydrolases-like superfamily protein [detail] 824566
4.8 UBC16 ubiquitin-conjugating enzyme 16 [detail] 843880
Coexpressed
gene list		 [Coexpressed gene list for VPS2.1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265375_at
265375_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265375_at
265375_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265375_at
265375_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 815211      
Refseq ID (protein) NP_001324346.1 
NP_565336.1 


The preparation time of this page was 0.2 [sec].