[←][→] ath   AT2G27600 Gene
functional annotation
Function   AAA-type ATPase family protein  
GO BP
GO:0055078 [list] [network] sodium ion homeostasis  (8 genes)  TAS  
GO:0007032 [list] [network] endosome organization  (10 genes)  IMP  
GO:0055075 [list] [network] potassium ion homeostasis  (19 genes)  TAS  
GO:0010091 [list] [network] trichome branching  (28 genes)  IMP  
GO:0007033 [list] [network] vacuole organization  (54 genes)  IBA IMP  
GO:0016192 [list] [network] vesicle-mediated transport  (417 genes)  IMP  
GO:0007049 [list] [network] cell cycle  (516 genes)  IEA  
GO:0015031 [list] [network] protein transport  (724 genes)  IEA  
GO CC
GO:0032585 [list] [network] multivesicular body membrane  (7 genes)  IEA  
GO:0005771 [list] [network] multivesicular body  (20 genes)  IDA  
GO:0005777 [list] [network] peroxisome  (325 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA ISM  
GO MF
GO:0016887 [list] [network] ATPase activity  (507 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04144 [list] [network] Endocytosis (144 genes)
Protein NP_180328.1 
BLAST NP_180328.1 
Orthologous [Ortholog page] LOC4325480 (osa)  LOC4328374 (osa)  LOC7466822 (ppo)  LOC11412911 (mtr)  LOC11446229 (mtr)  LOC100242617 (vvi)  LOC100243069 (vvi)  LOC100283774 (zma)  LOC100788150 (gma)  LOC100791614 (gma)  LOC100801165 (gma)  LOC100806836 (gma)  LOC101246490 (sly)  LOC101256349 (sly)  LOC101256646 (sly)  LOC103634814 (zma)  LOC103829677 (bra)  LOC103858309 (bra)  LOC103871571 (bra)  LOC107275709 (osa) 
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3  (predict for NP_180328.1)
Subcellular
localization
TargetP
other 8  (predict for NP_180328.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 6
ath04145 Phagosome 6
ath04144 Endocytosis 3
ath04141 Protein processing in endoplasmic reticulum 3
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with SKD1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.3 AT2G17190 ubiquitin family protein [detail] 816224
7.8 AT3G42050 vacuolar ATP synthase subunit H family protein [detail] 823170
7.4 AT5G15400 U-box domain-containing protein [detail] 831392
7.3 VIK VH1-interacting kinase [detail] 837960
7.1 AT5G46630 Clathrin adaptor complexes medium subunit family protein [detail] 834706
6.3 PEN2 PTEN 2 [detail] 821476
6.3 VPS34 vacuolar protein sorting 34 [detail] 842344
6.2 AMSH1 associated molecule with the SH3 domain of STAM 1 [detail] 841301
5.8 AT4G17830 Peptidase M20/M25/M40 family protein [detail] 827506
Coexpressed
gene list		 [Coexpressed gene list for SKD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266260_at
266260_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266260_at
266260_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266260_at
266260_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817306      
Refseq ID (protein) NP_180328.1 


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