ATTED-II : GeneID search result

[←][→] ath AT2G38880 Gene

functional annotation

Function

nuclear factor Y, subunit B1

GO BP

GO:0009414 [list] [network] response to water deprivation	(361 genes)	IMP
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	ISS

GO CC

GO:0016602 [list] [network] CCAAT-binding factor complex	(12 genes)	ISS
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA IEA ISM

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(122 genes)	IEA
GO:0043565 [list] [network] sequence-specific DNA binding	(796 genes)	IEA
GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	ISS
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_001031510.1 NP_001031511.1 NP_001189704.1 NP_001189705.1 NP_001318379.1 NP_001323548.1 NP_001323549.1 NP_001323550.1 NP_030436.1 NP_850304.2 NP_850305.2

BLAST

NP_001031510.1 NP_001031511.1 NP_001189704.1 NP_001189705.1 NP_001318379.1 NP_001323548.1 NP_001323549.1 NP_001323550.1 NP_030436.1 NP_850304.2 NP_850305.2

Orthologous

[Ortholog page] LOC542390 (zma) NF-YB8 (ath) NF-YB10 (ath) LOC9268285 (osa) LOC9268669 (osa) LOC11407040 (mtr) LOC11421480 (mtr) LOC11429747 (mtr) LOC100258807 (vvi) LOC100259924 (vvi) LOC100265391 (vvi) LOC100273424 (zma) LOC100285917 (zma) LOC100779577 (gma) LOC100791435 (gma) LOC100798667 (gma) LOC100815883 (gma) LOC100820170 (gma) LOC101251575 (sly) LOC101257257 (sly) LOC101258181 (sly) LOC103841259 (bra) LOC103857654 (bra) LOC103857825 (bra) LOC103865575 (bra) LOC103867074 (bra)

Subcellular
localization
wolf

nucl 4, mito 3, chlo 1, cyto_mito 1, mito_plas 1	(predict for NP_001031510.1)
nucl 8, mito 1, pero 1, golg 1	(predict for NP_001031511.1)
nucl 7, mito 1, plas 1, extr 1, golg 1, golg_plas 1, mito_plas 1	(predict for NP_001189704.1)
nucl 8, chlo 1, plas 1, extr 1	(predict for NP_001189705.1)
chlo 4, nucl 4, cyto 1, extr 1, pero 1, cyto_pero 1	(predict for NP_001318379.1)
chlo 4, nucl 4, cyto 1, extr 1, pero 1, cyto_pero 1	(predict for NP_001323548.1)
chlo 4, nucl 4, cyto 1, extr 1, pero 1, cyto_pero 1	(predict for NP_001323549.1)
nucl 8, chlo 1, plas 1, extr 1	(predict for NP_001323550.1)
nucl 8, mito 1, pero 1, golg 1	(predict for NP_030436.1)
nucl 8, mito 1, pero 1, golg 1	(predict for NP_850304.2)
nucl 7, mito 1, extr 1, pero 1, golg 1	(predict for NP_850305.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001031510.1)
other 8	(predict for NP_001031511.1)
other 8	(predict for NP_001189704.1)
other 8	(predict for NP_001189705.1)
other 8	(predict for NP_001318379.1)
other 8	(predict for NP_001323548.1)
other 8	(predict for NP_001323549.1)
other 8	(predict for NP_001323550.1)
other 8	(predict for NP_030436.1)
other 8	(predict for NP_850304.2)
other 8	(predict for NP_850305.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03020	RNA polymerase	2

Genes directly connected with NF-YB1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.9	NRPB6A	RNA polymerase Rpb6	[detail]	835269
5.5	AT2G15270	PRKR-interacting protein	[detail]	816016
5.3	emb1644	Small nuclear ribonucleoprotein family protein	[detail]	832834

Coexpressed
gene list

[Coexpressed gene list for NF-YB1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

266171_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

266171_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

266171_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	818472
Refseq ID (protein)	NP_001031510.1
	NP_001031511.1
	NP_001189704.1
	NP_001189705.1
	NP_001318379.1
	NP_001323548.1
	NP_001323549.1
	NP_001323550.1
	NP_030436.1
	NP_850304.2
	NP_850305.2

The preparation time of this page was 0.2 [sec].