[←][→] ath   AT2G39260 Gene
functional annotation
Function   regulator of nonsense transcripts UPF2  
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (19 genes)  IBA  
GO CC
GO:0035145 [list] [network] exon-exon junction complex  (6 genes)  IBA  
GO:0005844 [list] [network] polysome  (10 genes)  IBA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_181459.4 
BLAST NP_181459.4 
Orthologous [Ortholog page] LOC4330058 (osa)  LOC7458633 (ppo)  LOC11422854 (mtr)  LOC100194141 (zma)  LOC100258101 (vvi)  LOC100786092 (gma)  LOC100795746 (gma)  LOC101253276 (sly)  LOC103627442 (zma)  LOC103857854 (bra) 
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  vacu 1  (predict for NP_181459.4)
Subcellular
localization
TargetP
other 9  (predict for NP_181459.4)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 RNA transport 3
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with AT2G39260 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.0 LINC4 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 [detail] 836706
10.6 emb1441 zinc knuckle (CCHC-type) family protein [detail] 835056
9.9 emb1579 ATP/GTP-binding protein family [detail] 814844
9.4 AT2G33435 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 817909
8.7 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein [detail] 831529
8.0 CUL3B cullin 3B [detail] 843303
7.4 AT1G07990 SIT4 phosphatase-associated family protein [detail] 837314
6.2 AT4G26450 hypothetical protein [detail] 828751
5.7 AT3G53390 Transducin/WD40 repeat-like superfamily protein [detail] 824507
5.3 AT2G38950 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [detail] 818480
Coexpressed
gene list		 [Coexpressed gene list for AT2G39260]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267009_at
267009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267009_at
267009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267009_at
267009_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818511      
Refseq ID (protein) NP_181459.4 


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