ATTED-II : GeneID search result

[←][→] ath AT2G47620 Gene

functional annotation

Function

SWITCH/sucrose nonfermenting 3A

GO BP

GO:0006338 [list] [network] chromatin remodeling	(51 genes)	ISS
GO:0007275 [list] [network] multicellular organism development	(2714 genes)	IEA

GO CC

GO:0016514 [list] [network] SWI/SNF complex	(7 genes)	ISS
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0003677 [list] [network] DNA binding

(2280 genes)

IEA

KEGG

Protein

NP_001324817.1 NP_850476.1

BLAST

NP_001324817.1 NP_850476.1

Orthologous

[Ortholog page] LOC4336176 (osa) LOC7456341 (ppo) LOC11435068 (mtr) LOC100250960 (vvi) LOC100285161 (zma) LOC100790238 (gma) LOC100800135 (gma) SWI3A (sly) LOC103858250 (bra) LOC103866358 (bra)

Subcellular
localization
wolf

nucl 4, cyto 2, cysk 2, nucl_plas 2	(predict for NP_001324817.1)
cyto 4, nucl 4, cysk 1	(predict for NP_850476.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001324817.1)
other 8	(predict for NP_850476.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	7

Genes directly connected with SWI3A on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.4	ATO	splicing factor-like protein	[detail]	830503
5.9	CYP59	cyclophilin 59	[detail]	841810
5.8	AT4G21660	proline-rich spliceosome-associated (PSP) family protein	[detail]	828253

Coexpressed
gene list

[Coexpressed gene list for SWI3A]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

245149_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

245149_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

245149_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	819375
Refseq ID (protein)	NP_001324817.1
Refseq ID (protein)	NP_850476.1

The preparation time of this page was 2.1 [sec].