[←][→] ath   AT3G04160 Gene
functional annotation
Function   U11/U12 small nuclear ribonucleoprotein  
GO BP
GO:0008380 [list] [network] RNA splicing  (272 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001189804.1  NP_001326557.1  NP_187066.1 
BLAST NP_001189804.1  NP_001326557.1  NP_187066.1 
Orthologous [Ortholog page] LOC4335546 (osa)  LOC11425077 (mtr)  LOC100263926 (vvi)  LOC100279189 (zma)  LOC100803944 (gma)  LOC101244071 (sly)  LOC103848933 (bra)  LOC103859024 (bra) 
Subcellular
localization
wolf
chlo 5,  nucl 4  (predict for NP_001189804.1)
chlo 5,  nucl 4  (predict for NP_001326557.1)
chlo 5,  nucl 4  (predict for NP_187066.1)
Subcellular
localization
TargetP
chlo 4,  other 4  (predict for NP_001189804.1)
chlo 4,  other 4  (predict for NP_001326557.1)
chlo 4,  other 4  (predict for NP_187066.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
Genes directly connected with AT3G04160 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.2 AT1G61970 Mitochondrial transcription termination factor family protein [detail] 842492
10.1 AT1G70620 cyclin-like protein [detail] 843399
9.8 SR34b RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 828027
9.4 AT2G39580 zinc finger C3H1 domain protein [detail] 818543
9.1 AT2G42330 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [detail] 818834
9.0 AT5G03830 CDK inhibitor P21 binding protein [detail] 831702
7.7 AT3G45420 Concanavalin A-like lectin protein kinase family protein [detail] 823680
6.6 AT1G27921 [detail] 6240288
6.2 APRR8 pseudo-response regulator 8 [detail] 828011
5.7 AT2G17036 F-box SKIP23-like protein (DUF295) [detail] 816208
5.6 RLP14 receptor like protein 14 [detail] 843758
5.4 SBT3.12 subtilase 3.12 [detail] 827882
5.0 VIIIB P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 828845
4.5 AT5G10800 RNA recognition motif (RRM)-containing protein [detail] 830947
Coexpressed
gene list		 [Coexpressed gene list for AT3G04160]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258581_at
258581_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258581_at
258581_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258581_at
258581_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819571      
Refseq ID (protein) NP_001189804.1 
NP_001326557.1 
NP_187066.1 


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