[←][→] ath   AT3G06480 Gene
functional annotation
Function   DEAD box RNA helicase family protein  
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (19 genes)  IEA  
GO:0006364 [list] [network] rRNA processing  (276 genes)  IEA  
GO CC
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001327723.1  NP_187299.1 
BLAST NP_001327723.1  NP_187299.1 
Orthologous [Ortholog page] DRH1 (ath)  AT5G14610 (ath)  LOC4326190 (osa)  LOC4327645 (osa)  LOC4351155 (osa)  LOC7461318 (ppo)  LOC7468130 (ppo)  LOC7487865 (ppo)  LOC11420002 (mtr)  LOC11430941 (mtr)  LOC100252874 (vvi)  LOC100264477 (vvi)  LOC100381583 (zma)  LOC100381784 (zma)  LOC100383248 (zma)  LOC100786511 (gma)  LOC100806371 (gma)  LOC100807830 (gma)  LOC100816455 (gma)  LOC101248651 (sly)  LOC101254752 (sly)  LOC101266555 (sly)  LOC103636001 (zma)  LOC103849856 (bra)  LOC103850938 (bra)  LOC103858908 (bra)  LOC103859161 (bra)  LOC109945984 (zma) 
Subcellular
localization
wolf
nucl 6,  cyto 2,  mito 1,  vacu 1,  pero 1  (predict for NP_001327723.1)
nucl 10  (predict for NP_187299.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001327723.1)
other 9  (predict for NP_187299.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with AT3G06480 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.6 KAK HECT ubiquitin protein ligase family protein KAK [detail] 830017
7.6 SE C2H2 zinc-finger protein SERRATE (SE) [detail] 817252
7.1 AT1G27430 GYF domain-containing protein [detail] 839633
Coexpressed
gene list		 [Coexpressed gene list for AT3G06480]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258910_at
258910_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258910_at
258910_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258910_at
258910_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819825      
Refseq ID (protein) NP_001327723.1 
NP_187299.1 


The preparation time of this page was 0.2 [sec].