ATTED-II : GeneID search result

[←][→] ath AT3G07950 Gene

functional annotation

Function

rhomboid protein-like protein

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum

(29 genes)

IBA

GO CC

GO:0000138 [list] [network] Golgi trans cisterna	(85 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1430 genes)	IBA IDA
GO:0016021 [list] [network] integral component of membrane	(4803 genes)	IEA

GO MF

KEGG

Protein

NP_566326.1

BLAST

NP_566326.1

Orthologous

[Ortholog page] LOC4332877 (osa) LOC4344140 (osa) LOC7479886 (ppo) LOC11427992 (mtr) LOC100258140 (vvi) LOC100272463 (zma) LOC100283447 (zma) LOC100777370 (gma) LOC100799282 (gma) LOC100805179 (gma) LOC101259931 (sly) LOC103848942 (bra) LOC103870622 (bra)

Subcellular
localization
wolf

plas 6, E.R. 1, golg 1, chlo 1, vacu 1, cyto_E.R. 1

(predict for NP_566326.1)

Subcellular
localization
TargetP

scret 6, other 3

(predict for NP_566326.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G07950 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.8	ATCES1	Alkaline phytoceramidase (aPHC)	[detail]	828328
7.7	AT1G16560	Per1-like family protein	[detail]	838226
6.9	AT4G12650	Endomembrane protein 70 protein family	[detail]	826878
6.1	SCAMP5	SCAMP family protein	[detail]	840097

Coexpressed
gene list

[Coexpressed gene list for AT3G07950]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258638_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258638_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258638_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	819986
Refseq ID (protein)	NP_566326.1

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