ATTED-II : GeneID search result

[←][→] ath AT3G09480 Gene

functional annotation

Function

Histone superfamily protein

GO BP

GO:0006334 [list] [network] nucleosome assembly

(34 genes)

IBA

GO CC

GO:0000786 [list] [network] nucleosome	(45 genes)	IEA
GO:0005829 [list] [network] cytosol	(3506 genes)	HDA
GO:0005634 [list] [network] nucleus	(10793 genes)	IEA ISM

GO MF

GO:0046982 [list] [network] protein heterodimerization activity	(122 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2280 genes)	IBA

KEGG

Protein

NP_187559.1

BLAST

NP_187559.1

Orthologous

[Ortholog page] LOC542301 (zma) H2B-1 (sly) AT2G28720 (ath) AT2G37470 (ath) HTB9 (ath) HTB11 (ath) AT5G02570 (ath) HTB2 (ath) HTB4 (ath) HTB1 (ath) AT1G08170 (ath) LOC4324495 (osa) LOC4324500 (osa) LOC4324502 (osa) LOC4324504 (osa) LOC4324510 (osa) LOC4324512 (osa) LOC4327384 (osa) LOC4339681 (osa) LOC4345904 (osa) LOC7463471 (ppo) LOC9268195 (osa) LOC11416780 (mtr) LOC11417139 (mtr) LOC11426605 (mtr) LOC11431194 (mtr) LOC11432921 (mtr) LOC11442767 (mtr) LOC25484839 (mtr) LOC25485824 (mtr) LOC25492478 (mtr) LOC25492530 (mtr) LOC25492533 (mtr) LOC25492556 (mtr) LOC25492748 (mtr) LOC25493050 (mtr) AT3G53650 (ath) LOC100192792 (zma) LOC100193014 (zma) LOC100251955 (vvi) LOC100253395 (vvi) LOC100258812 (vvi) LOC100263369 (vvi) LOC100273491 (zma) LOC100273745 (zma) LOC100274083 (zma) LOC100305731 (gma) LOC100305866 (gma) LOC100499734 (gma) LOC100500314 (gma) LOC100501306 (zma) LOC100501458 (zma) LOC100501614 (zma) LOC100789702 (gma) LOC100793796 (gma) LOC100805396 (gma) LOC100806140 (gma) LOC100817849 (gma) LOC100820177 (gma) LOC101244346 (sly) LOC101245134 (sly) LOC101252186 (sly) LOC101253792 (sly) H2B-3 (sly) LOC101261496 (sly) LOC101264987 (sly) LOC101267024 (sly) LOC103639304 (zma) LOC103647254 (zma) LOC103647911 (zma) LOC103829764 (bra) LOC103829945 (bra) LOC103841289 (bra) LOC103845413 (bra) LOC103845511 (bra) LOC103849084 (bra) LOC103851535 (bra) LOC103856534 (bra) LOC103856593 (bra) LOC103858282 (bra) LOC103863386 (bra) LOC103864913 (bra) LOC103871565 (bra) LOC103873395 (bra) LOC104648016 (sly) LOC111828532 (gma)

Subcellular
localization
wolf

nucl 10

(predict for NP_187559.1)

Subcellular
localization
TargetP

other 9

(predict for NP_187559.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G09480 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
9.5	AT2G37470	Histone superfamily protein	[detail]	818324
8.3	HTB1	Histone superfamily protein	[detail]	837293
8.0	HTA13	histone H2A 13	[detail]	821614
7.2	AT3G53650	Histone superfamily protein	[detail]	28719403

Coexpressed
gene list

[Coexpressed gene list for AT3G09480]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258707_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258707_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258707_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820105
Refseq ID (protein)	NP_187559.1

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