[←][→] ath   AT3G16500 Gene
functional annotation
Function   phytochrome-associated protein 1  
GO BP
GO:0009734 [list] [network] auxin-activated signaling pathway  (196 genes)  IEA  
GO:0009733 [list] [network] response to auxin  (407 genes)  TAS  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04075 [list] [network] Plant hormone signal transduction (273 genes)
Protein NP_001325855.1  NP_188271.1 
BLAST NP_001325855.1  NP_188271.1 
Orthologous [Ortholog page] IAA18 (ath)  LOC4326775 (osa)  LOC4328796 (osa)  LOC7463734 (ppo)  LOC7470733 (ppo)  LOC7475101 (ppo)  LOC9272441 (osa)  LOC11418902 (mtr)  LOC11433445 (mtr)  LOC100247345 (vvi)  LOC100266914 (vvi)  LOC100274580 (zma)  LOC100279375 (zma)  LOC100283352 (zma)  LOC100284398 (zma)  LOC100305794 (gma)  LOC100793822 (gma)  LOC100799244 (gma)  LOC100804593 (gma)  IAA26 (sly)  LOC103832822 (bra)  LOC103839967 (bra)  LOC103859673 (bra)  LOC103869753 (bra)  LOC103871247 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 4,  nucl_plas 2,  cyto_pero 2  (predict for NP_001325855.1)
nucl 5,  nucl_plas 3,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_188271.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001325855.1)
other 9  (predict for NP_188271.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
Genes directly connected with PAP1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
4.6 AT5G56460 Protein kinase superfamily protein [detail] 835747
4.3 PAP2 phytochrome-associated protein 2 [detail] 829029
4.1 AT1G21050 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) [detail] 838699
Coexpressed
gene list		 [Coexpressed gene list for PAP1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257232_at
257232_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257232_at
257232_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257232_at
257232_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820898      
Refseq ID (protein) NP_001325855.1 
NP_188271.1 


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