ATTED-II : GeneID search result

[←][→] ath AT3G28980 Gene

functional annotation

Function

mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)

GO BP

GO CC

GO:0005576 [list] [network] extracellular region

(3363 genes)

ISM

GO MF

KEGG

Protein

NP_001326976.1 NP_001326977.1 NP_001326978.1 NP_001326979.1 NP_189540.2

BLAST

NP_001326976.1 NP_001326977.1 NP_001326978.1 NP_001326979.1 NP_189540.2

Orthologous

[Ortholog page] AT3G28810 (ath) AT3G28820 (ath) LOC103835215 (bra) LOC103840398 (bra)

Subcellular
localization
wolf

vacu 5, golg 3, E.R._vacu 3	(predict for NP_001326976.1)
vacu 5, golg 3, nucl 1, golg_plas 1	(predict for NP_001326977.1)
vacu 5, golg 3, E.R._vacu 3	(predict for NP_001326978.1)
vacu 5, golg 3, E.R._vacu 3	(predict for NP_001326979.1)
vacu 5, golg 3, nucl 1, golg_plas 1	(predict for NP_189540.2)

Subcellular
localization
TargetP

scret 9	(predict for NP_001326976.1)
scret 9	(predict for NP_001326977.1)
scret 9	(predict for NP_001326978.1)
scret 9	(predict for NP_001326979.1)
scret 9	(predict for NP_189540.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3

Genes directly connected with AT3G28980 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
12.3	AT3G28790	transmembrane protein, putative (DUF1216)	[detail]	822511
9.9	VGDH2	VANGUARD-like protein	[detail]	825390
9.5	AT5G38760	Late embryogenesis abundant protein (LEA) family protein	[detail]	833867

Coexpressed
gene list

[Coexpressed gene list for AT3G28980]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258058_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258058_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258058_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	822538
Refseq ID (protein)	NP_001326976.1
	NP_001326977.1
	NP_001326978.1
	NP_001326979.1
	NP_189540.2

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