[←][→] ath   AT3G46620 Gene
functional annotation
Function   zinc finger (C3HC4-type RING finger) family protein  
GO BP
GO:0051865 [list] [network] protein autoubiquitination  (17 genes)  IDA  
GO:0010200 [list] [network] response to chitin  (142 genes)  IEP  
GO:0009738 [list] [network] abscisic acid-activated signaling pathway  (194 genes)  IEA  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IMP  
GO:0009737 [list] [network] response to abscisic acid  (574 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IBA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA IDA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IBA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_190246.1 
BLAST NP_190246.1 
Orthologous [Ortholog page] RHC2A (ath)  RDUF2 (ath)  LOC4332393 (osa)  LOC4337586 (osa)  LOC7454941 (ppo)  LOC7468627 (ppo)  LOC7485690 (ppo)  LOC7487968 (ppo)  LOC7490384 (ppo)  LOC11414430 (mtr)  LOC11419123 (mtr)  LOC11433768 (mtr)  LOC25489325 (mtr)  LOC100216907 (zma)  LOC100244277 (vvi)  LOC100256404 (vvi)  LOC100265659 (vvi)  LOC100778994 (gma)  LOC100784364 (gma)  LOC100784822 (gma)  LOC100789228 (gma)  LOC100792020 (gma)  LOC100792874 (gma)  LOC100798563 (gma)  LOC100804867 (gma)  LOC100807324 (gma)  LOC101256865 (sly)  LOC101256882 (sly)  LOC103637322 (zma)  LOC103639315 (zma)  LOC103845376 (bra)  LOC103851573 (bra)  LOC103856624 (bra)  LOC103857876 (bra)  LOC103861302 (bra)  LOC103867017 (bra)  LOC106796723 (gma)  LOC107546767 (zma) 
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_190246.1)
Subcellular
localization
TargetP
other 8  (predict for NP_190246.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
Genes directly connected with RDUF1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.1 RDUF2 zinc finger (C3HC4-type RING finger) family protein [detail] 836074
12.5 NUDT21 nudix hydrolase homolog 21 [detail] 843688
12.2 AT4G29780 nuclease [detail] 829100
11.7 NUDT4 nudix hydrolase homolog 4 [detail] 838410
11.5 AT2G30020 Protein phosphatase 2C family protein [detail] 817553
11.3 RHL41 C2H2-type zinc finger family protein [detail] 836103
10.8 BAP1 BON association protein 1 [detail] 825291
9.7 AT1G23710 hypothetical protein (DUF1645) [detail] 838981
9.5 GATL10 galacturonosyltransferase-like 10 [detail] 822462
9.5 PBP1 pinoid-binding protein 1 [detail] 835537
9.0 CML23 calmodulin like 23 [detail] 842958
8.1 UCP5 uncoupling protein 5 [detail] 816783
7.2 AT5G66650 calcium uniporter (DUF607) [detail] 836797
7.1 AT1G61470 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 842441
6.2 AT1G03730 pyrroline-5-carboxylate reductase [detail] 839106
Coexpressed
gene list		 [Coexpressed gene list for RDUF1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252474_at
252474_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252474_at
252474_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252474_at
252474_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823815      
Refseq ID (protein) NP_190246.1 


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