[←][→] ath   AT3G48880 Gene
functional annotation
Function   RNI-like superfamily protein  
GO BP
GO:0050829 [list] [network] defense response to Gram-negative bacterium  (20 genes)  IMP  
GO CC
GO MF
GO:1905761 [list] [network] SCF ubiquitin ligase complex binding  (1 genes)  IPI  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001327846.1  NP_190457.1  NP_850671.1 
BLAST NP_001327846.1  NP_190457.1  NP_850671.1 
Orthologous [Ortholog page] LOC4349047 (osa)  LOC25485083 (mtr)  LOC25485084 (mtr)  LOC100248117 (vvi)  LOC100273810 (zma)  LOC100789355 (gma)  LOC100791249 (gma)  LOC101246600 (sly)  LOC101247404 (sly)  LOC101247698 (sly)  LOC103873111 (bra)  LOC103874908 (bra) 
Subcellular
localization
wolf
cyto 5,  nucl 4,  cysk 1,  golg 1  (predict for NP_001327846.1)
cyto 5,  nucl 4,  cysk 1,  golg 1  (predict for NP_190457.1)
cyto 5,  nucl 4,  cysk 1,  golg 1  (predict for NP_850671.1)
Subcellular
localization
TargetP
other 9,  mito 3  (predict for NP_001327846.1)
other 9,  mito 3  (predict for NP_190457.1)
other 9,  mito 3  (predict for NP_850671.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with AT3G48880 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.0 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 [detail] 837824
6.5 VAMP727 vesicle-associated membrane protein 727 [detail] 824597
6.3 AT4G37880 LisH/CRA/RING-U-box domains-containing protein [detail] 829944
Coexpressed
gene list		 [Coexpressed gene list for AT3G48880]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252336_at
252336_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252336_at
252336_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252336_at
252336_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824049      
Refseq ID (protein) NP_001327846.1 
NP_190457.1 
NP_850671.1 


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