[←][→] ath   AT3G48900 Gene
functional annotation
Function   single-stranded DNA endonuclease family protein  
GO BP
GO:0090305 [list] [network] nucleic acid phosphodiester bond hydrolysis  (71 genes)  IDA  
GO:0006281 [list] [network] DNA repair  (295 genes)  IEA  
GO:0006259 [list] [network] DNA metabolic process  (441 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0017108 [list] [network] 5'-flap endonuclease activity  (4 genes)  IBA  
GO:0008821 [list] [network] crossover junction endodeoxyribonuclease activity  (7 genes)  IBA IDA  
GO:0048256 [list] [network] flap endonuclease activity  (7 genes)  IBA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001118795.1  NP_001325691.1  NP_190459.2 
BLAST NP_001118795.1  NP_001325691.1  NP_190459.2 
Orthologous [Ortholog page] LOC4344420 (osa)  LOC7454502 (ppo)  LOC11439238 (mtr)  LOC100256642 (vvi)  LOC100282987 (zma)  LOC100806919 (gma)  LOC101248457 (sly)  LOC103874916 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 4,  vacu 1  (predict for NP_001118795.1)
extr 3,  plas 2,  E.R. 1,  golg 1,  nucl_plas 1,  mito_plas 1  (predict for NP_001325691.1)
extr 3,  plas 1,  E.R. 1,  golg 1,  golg_plas 1,  E.R._plas 1  (predict for NP_190459.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001118795.1)
scret 9  (predict for NP_001325691.1)
scret 9  (predict for NP_190459.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G48900 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.1 AT3G26050 TPX2 (targeting protein for Xklp2) protein family [detail] 822202
5.9 AT1G61450 CAP-gly domain linker [detail] 842439
5.9 AT5G02370 ATP binding microtubule motor family protein [detail] 831740
Coexpressed
gene list		 [Coexpressed gene list for AT3G48900]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252339_at
252339_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252339_at
252339_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252339_at
252339_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824051      
Refseq ID (protein) NP_001118795.1 
NP_001325691.1 
NP_190459.2 


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