[←][→] ath   AT3G52120 Gene
functional annotation
Function   SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein  
GO BP
GO:0008380 [list] [network] RNA splicing  (272 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IEA ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG
Protein NP_001118822.1  NP_001327196.1  NP_001327197.1  NP_566957.1 
BLAST NP_001118822.1  NP_001327196.1  NP_001327197.1  NP_566957.1 
Orthologous [Ortholog page] LOC4346613 (osa)  LOC7463861 (ppo)  LOC11446217 (mtr)  LOC25501036 (mtr)  LOC100284792 (zma)  LOC100786213 (gma)  LOC100813337 (gma)  LOC100855141 (vvi)  LOC101265475 (sly)  LOC103841148 (bra) 
Subcellular
localization
wolf
nucl 6,  chlo 1,  mito 1,  vacu 1,  golg 1,  chlo_mito 1,  cyto_pero 1  (predict for NP_001118822.1)
chlo 6,  nucl 3,  chlo_mito 3  (predict for NP_001327196.1)
chlo 5,  vacu 3,  nucl 1,  extr 1,  pero 1  (predict for NP_001327197.1)
nucl 9,  mito 1,  plas 1,  mito_plas 1  (predict for NP_566957.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001118822.1)
other 4  (predict for NP_001327196.1)
other 4  (predict for NP_001327197.1)
other 8  (predict for NP_566957.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT3G52120 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.5 CID3 CTC-interacting domain 3 [detail] 841857
7.4 EML3 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [detail] 831142
6.2 AT1G21080 DNAJ heat shock N-terminal domain-containing protein [detail] 838704
Coexpressed
gene list		 [Coexpressed gene list for AT3G52120]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252038_at
252038_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252038_at
252038_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252038_at
252038_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824376      
Refseq ID (protein) NP_001118822.1 
NP_001327196.1 
NP_001327197.1 
NP_566957.1 


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