ATTED-II : GeneID search result

[←][→] ath AT3G53610 Gene

functional annotation

Function

RAB GTPase homolog 8

GO BP

GO:0017157 [list] [network] regulation of exocytosis	(9 genes)	IBA
GO:0006904 [list] [network] vesicle docking involved in exocytosis	(16 genes)	IBA
GO:0009306 [list] [network] protein secretion	(16 genes)	IBA
GO:0032482 [list] [network] Rab protein signal transduction	(57 genes)	IBA
GO:0006886 [list] [network] intracellular protein transport	(516 genes)	IBA

GO CC

GO:0000139 [list] [network] Golgi membrane	(404 genes)	IEA
GO:0005829 [list] [network] cytosol	(3506 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IBA IDA

GO MF

GO:0003924 [list] [network] GTPase activity	(169 genes)	IBA
GO:0005525 [list] [network] GTP binding	(248 genes)	IEA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath04144 [list] [network] Endocytosis (144 genes)

Protein

NP_001078278.1 NP_190929.1 NP_850696.1

BLAST

NP_001078278.1 NP_190929.1 NP_850696.1

Orthologous

[Ortholog page] ER43 (sly) ypt2 (sly) RABE1e (ath) RABE1c (ath) RAB8C (ath) AT5G59840 (ath) LOC4334590 (osa) LOC4339021 (osa) LOC4342644 (osa) LOC4342802 (osa) LOC7488135 (ppo) LOC11412245 (mtr) LOC11420796 (mtr) LOC11425056 (mtr) LOC11432353 (mtr) LOC25485703 (mtr) LOC100192989 (zma) LOC100243217 (vvi) LOC100252992 (vvi) LOC100257177 (vvi) LOC100263639 (vvi) LOC100272423 (zma) LOC100273222 (zma) LOC100273382 (zma) LOC100499844 (gma) LOC100502497 (zma) LOC100775804 (gma) LOC100779203 (gma) LOC100780673 (gma) LOC100782753 (gma) LOC100786439 (gma) LOC100800345 (gma) LOC100816795 (gma) LOC101250995 (sly) LOC101264577 (sly) LOC101267153 (sly) LOC103632090 (zma) LOC103635765 (zma) LOC103639686 (zma) LOC103829943 (bra) LOC103841286 (bra) LOC103845404 (bra) LOC103855520 (bra) LOC103863391 (bra) BRAB-1 (bra) LOC103873604 (bra) LOC103873612 (bra)

Subcellular
localization
wolf

chlo 4, cyto 4, mito 1, nucl 1, extr 1, cyto_mito 1, mito_plas 1	(predict for NP_001078278.1)
chlo 4, cyto 4, mito 1, nucl 1, extr 1, cyto_mito 1, mito_plas 1	(predict for NP_190929.1)
chlo 4, cyto 4, mito 1, nucl 1, extr 1, cyto_mito 1, mito_plas 1	(predict for NP_850696.1)

Subcellular
localization
TargetP

other 5, scret 4, mito 3	(predict for NP_001078278.1)
other 5, scret 4, mito 3	(predict for NP_190929.1)
other 5, scret 4, mito 3	(predict for NP_850696.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	5

Genes directly connected with RAB8 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.9	RABE1c	RAB GTPase homolog 8A	[detail]	823749
7.7	RAB6A	Ras-related small GTP-binding family protein	[detail]	819069
6.6	ARF3	ADP-ribosylation factor 3	[detail]	817014
6.1	AT1G26940	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[detail]	839584

Coexpressed
gene list

[Coexpressed gene list for RAB8]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

251960_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

251960_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

251960_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824529
Refseq ID (protein)	NP_001078278.1
	NP_190929.1
	NP_850696.1

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