ATTED-II : GeneID search result

[←][→] ath AT3G55960 Gene

functional annotation

Function

Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

GO BP

GO:0007623 [list] [network] circadian rhythm

(111 genes)

IEP

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

ISM

GO MF

GO:0004721 [list] [network] phosphoprotein phosphatase activity

(174 genes)

IBA

KEGG

Protein

NP_191155.1

BLAST

NP_191155.1

Orthologous

[Ortholog page] LOC4327404 (osa) LOC4339051 (osa) LOC7487322 (ppo) LOC7488022 (ppo) LOC7490326 (ppo) LOC11411270 (mtr) LOC11428642 (mtr) LOC100216776 (zma) LOC100248837 (vvi) LOC100262172 (vvi) LOC100282077 (zma) LOC100783451 (gma) LOC100819720 (gma) LOC101252994 (sly) LOC101257861 (sly) LOC103830029 (bra) LOC103841497 (bra) LOC103865772 (bra)

Subcellular
localization
wolf

chlo 4, nucl 2, cyto 2, cyto_nucl 2, chlo_mito 2

(predict for NP_191155.1)

Subcellular
localization
TargetP

mito 4, other 4

(predict for NP_191155.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G55960 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.1	AT2G21120	magnesium transporter, putative (DUF803)	[detail]	816647
5.5	APRL7	APR-like 7	[detail]	831930
5.2	CCR3	CRINKLY4 related 3	[detail]	824761
4.7	AT2G31110	trichome birefringence-like protein (DUF828)	[detail]	817667

Coexpressed
gene list

[Coexpressed gene list for AT3G55960]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

251773_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

251773_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

251773_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824762
Refseq ID (protein)	NP_191155.1

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