[←][→] ath   AT3G56510 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO:0000472 [list] [network] endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (1 genes)  IBA  
GO:0000480 [list] [network] endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (1 genes)  IBA  
GO:0034462 [list] [network] small-subunit processome assembly  (1 genes)  IBA  
GO:0000447 [list] [network] endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (4 genes)  IBA  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG
Protein NP_001030873.1  NP_001326046.1  NP_001326047.1  NP_001326048.1  NP_191210.2 
BLAST NP_001030873.1  NP_001326046.1  NP_001326047.1  NP_001326048.1  NP_191210.2 
Orthologous [Ortholog page] LOC4344189 (osa)  LOC11416006 (mtr)  LOC100192645 (zma)  LOC100259435 (vvi)  LOC100782763 (gma)  LOC100798524 (gma)  LOC101251521 (sly)  LOC101268320 (sly)  LOC103841555 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001030873.1)
nucl 10  (predict for NP_001326046.1)
nucl 10  (predict for NP_001326047.1)
nucl 10  (predict for NP_001326048.1)
nucl 10  (predict for NP_191210.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001030873.1)
other 9  (predict for NP_001326046.1)
other 9  (predict for NP_001326047.1)
other 9  (predict for NP_001326048.1)
other 9  (predict for NP_191210.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with AT3G56510 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.0 AT5G08420 RNA-binding KH domain-containing protein [detail] 830741
6.9 AT3G51270 protein serine/threonine kinase [detail] 824290
6.7 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 830337
6.0 AT4G18593 dual specificity protein phosphatase-like protein [detail] 827592
5.2 AT5G59460 scarecrow-like transcription factor 11 (SCL11) [detail] 836065
Coexpressed
gene list		 [Coexpressed gene list for AT3G56510]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251690_at
251690_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251690_at
251690_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251690_at
251690_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824818      
Refseq ID (protein) NP_001030873.1 
NP_001326046.1 
NP_001326047.1 
NP_001326048.1 
NP_191210.2 


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