[←][→] ath   AT3G56580 Gene
functional annotation
Function   RING/U-box superfamily protein  
GO BP
GO:1902006 [list] [network] negative regulation of proline biosynthetic process  (1 genes)  IMP  
GO:0030104 [list] [network] water homeostasis  (10 genes)  IMP  
GO:2000070 [list] [network] regulation of response to water deprivation  (31 genes)  IMP  
GO:0047484 [list] [network] regulation of response to osmotic stress  (34 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IEP  
GO:0006970 [list] [network] response to osmotic stress  (563 genes)  IEP  
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IBA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (204 genes)  IBA  
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (434 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG
Protein NP_001030874.1  NP_567039.1  NP_974448.1 
BLAST NP_001030874.1  NP_567039.1  NP_974448.1 
Orthologous [Ortholog page] RHC1A (ath)  LOC4332849 (osa)  LOC7458900 (ppo)  LOC7495674 (ppo)  LOC11431832 (mtr)  LOC25480121 (mtr)  LOC25483287 (mtr)  LOC100251284 (vvi)  LOC100265395 (vvi)  LOC100283413 (zma)  LOC100787242 (gma)  LOC100787523 (gma)  LOC100813674 (gma)  LOC100819514 (gma)  LOC101254413 (sly)  LOC103841559 (bra)  LOC103857956 (bra)  LOC103866521 (bra) 
Subcellular
localization
wolf
nucl 8,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_001030874.1)
nucl 8,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_567039.1)
nucl 8,  cyto_nucl 4,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_974448.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001030874.1)
mito 8  (predict for NP_567039.1)
mito 8  (predict for NP_974448.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G56580 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.6 AT3G08680 Leucine-rich repeat protein kinase family protein [detail] 820015
5.1 AT1G50120 immunoglobulin [detail] 841434
5.1 SEC15A exocyst complex component sec15A [detail] 824831
Coexpressed
gene list		 [Coexpressed gene list for AT3G56580]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251708_at
251708_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251708_at
251708_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251708_at
251708_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824825      
Refseq ID (protein) NP_001030874.1 
NP_567039.1 
NP_974448.1 


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